Hcic000535.1
Basic Information
- Insect
- Hycleus cichorii
- Gene Symbol
- lrrfip2
- Assembly
- GCA_013841215.1
- Location
- JACDRQ010000353.1:13326-21710[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-113 1.8e-109 365.2 34.9 1 300 28 337 28 337 0.92 2 2 0.021 2.7e+02 0.1 4.4 120 174 335 386 334 410 0.78
Sequence Information
- Coding Sequence
- ATGGACGGCGTTGGTGGCCGAAGACGTTTAGCTGCCAAATCGTCTGCTGAGGACCAGGCGCTTGATCAAATCGCTAAAGAGGCAGAAGCACGACTTTGGGCCAAACGACAAGCTAGAGCTGAAGCTAGAGAGATTCGTATGCGCGAACTGGAGCGCCAACAGAAAGAACAAGAAGAGAATGCTGATCGACAATTCGATATGTTATCAGAACCGATTTCAAGAGCAACAAGGTCGATTACTAGTGGCAGTAGATATCTGTCTAGTCGGCGAAGTTCTGAAGATTCCTTGGAGGATGGTGGTAGTCTTCGGGATTTACGGAATGAATTAAAGGAAGTCGAAGAGAAATTCCGGAAAGCGATGATTGCAAATGCTCAACTCGATAATGATAAAACGGCCCAAACATATCAACTGGAATTACTCAAAGATCGTATAGAAGAATTAGAAGAAGAACATGCACAATTGAAACGTGAACATAGAGAAAAATGTCGTGAATGTGATCAATTAAAACGTTTATGTGCAAAATTAAAAGATGATTTGGCTGTGACTAAAGCTGAATTAATTGAACGAGATCAATTAATTACTGAAAAAGGTTTAGTAATTGTTGGTGATGATACTATTATTGATGAAGAACAAAGAAATGGCGATATTAGTCTTAATAATAATAGTAATAATAATATAAATAATAGTTTAAATGGTACACCGAAAAGGGCATTAGTTAGTATTGAGAATGCACAATTATTAGAAAGTGCCGGTGAAGGTAGTTTAGATGTACGATTAGCGAAATTTGCAAAAGAAAAAAGCGAATTACAAGATCAAATTAGTCATTTAAAATTAGAATTAGAAGAAGAAAGGAATAAACGAAAGAAATCTAGTAGTGGTATTAATATTAATACCCAAAATGGACCATCTTCTGATTATGATACAGATGAAATTGATATACAACGAGAAGCTAGTAGACAATTAGGTGATTATAAATTTAGAGCACAGAAAGCTGAACAAGATGTTGCTACATTACAAGCAACTGTAGCACGATTAGAGAGTCAAGTGATTCGATATAAAGCAGCAGCGGAAATGTCGGAAAAAGCAGAGGAAGCTTTAAAATTAGAAAAAAGAAAACTACAAAGAGAAGCAAGAGAAGCATTAAGTCGTGCTGAAGAATTGGAAACTTCCAATACACACCTATTGAAACGTTTAGATAAATTGAAAAATGCCAAATCGGCTTTATTGAAAGAACTTTGA
- Protein Sequence
- MDGVGGRRRLAAKSSAEDQALDQIAKEAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMLSEPISRATRSITSGSRYLSSRRSSEDSLEDGGSLRDLRNELKEVEEKFRKAMIANAQLDNDKTAQTYQLELLKDRIEELEEEHAQLKREHREKCRECDQLKRLCAKLKDDLAVTKAELIERDQLITEKGLVIVGDDTIIDEEQRNGDISLNNNSNNNINNSLNGTPKRALVSIENAQLLESAGEGSLDVRLAKFAKEKSELQDQISHLKLELEEERNKRKKSSSGININTQNGPSSDYDTDEIDIQREASRQLGDYKFRAQKAEQDVATLQATVARLESQVIRYKAAAEMSEKAEEALKLEKRKLQREAREALSRAEELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00929573;
- 90% Identity
- iTF_00814404; iTF_00987126;
- 80% Identity
- -