Hcor008748.1
Basic Information
- Insect
- Hormaphis cornu
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_017140985.1
- Location
- CM029365.1:6906223-6910773[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-95 6.6e-91 304.9 31.8 1 300 32 327 32 327 0.91 2 2 0.013 2.5e+02 0.9 3.9 121 172 326 377 325 387 0.88
Sequence Information
- Coding Sequence
- ATGGACAGTCTTAGTTCTGCTACAGGCGGTCGTCGTAGGCTTCCAACTACTCATTATGCAGAGGATCAAGCTTTTGATCAAATAGCAAAAGAAGCAGAATCTCGTTTGGCTGCCAGACGTCAGGCCCGCGCCGAAGCGAGAGAAATTCGTATGCGTGAGATTGAAAGACAACAAAAAGAAGCCACAGAAAATGCAGATAAAGCTTTTGATATGAATTCAGCAGATGGGTCGATTCGAGTATCTCGAGTTGGTGGAAACTCTGTAAGTCCTCGAACACCCAGTTCTATAATAAATAACAGTTACCAATCTAGTCGACGTAATTCAATAGATTCTCTTGATGAATCTACTCCTAATTTTCGAGATTTAAGGATGGAACTTAAAGACCTTGAAGAAAAGTTTCGTAAAGCTATGGTTCAAAATGCCCAACTTGACAATGAAAAATCAGCTGTTACATATATGGTTGAGTTATACAAGGACAAGTATACAGACATTGAAGAAGAACTTATGCATATAAAAAAAGAACACAAAGAAACCTCTAAAGAAAACGAAAAACTAAAACGCTTATTAGCTACTCAAAAATTAGAATCAATGTCACTACAAGAAGAAATAGAAGAACGTGATAAACTTATAGTGAAAAAAGGACTAGTAATTATCAGTACAGAACAAGATTCAAATGACAATCTTGATCAAAATAATAAACAAATACAACGAGCCTTAGTTTCTGTCGAAAATGCTCAATTTTTGCAGCACGCCACAGAAGGTTCTCTAGATGTACGGCTTAAAAAATTGACTGAAGAACGTAACAGTTATTTAGATGAAATAAAACAGCTCAAATTGGAATTGCAAGAAGCAAAGTGTTATAGTGATAGCCATTTTAATGGTTCAGACTCGGATGATTTGGAAGATGTTCAAAAAGAATCTAATAAAATACTTGGTGATTACAAATTTAAATGGCAAAAGGCTGAACAAGATATTTCTACATTACAAGCAAACGTAGCTAGGCTTGAAAGCCAAGTTATAAGATACAAAGCAGCTTCTGAAGCAGGAGAAAAAGCTGAAGATGAGCTTAAGTTAGAAAAACGAAAACTACAACGTGAGCTCAGAGAATCACAAGCTAAAGTTGAAGAACTGGAGACATCAAATATGCATTTGTTAAAACGTTTTGATAAACTAAAAAATGCCAAATCCAGTTTATTAAAAGATTTGTAG
- Protein Sequence
- MDSLSSATGGRRRLPTTHYAEDQAFDQIAKEAESRLAARRQARAEAREIRMREIERQQKEATENADKAFDMNSADGSIRVSRVGGNSVSPRTPSSIINNSYQSSRRNSIDSLDESTPNFRDLRMELKDLEEKFRKAMVQNAQLDNEKSAVTYMVELYKDKYTDIEEELMHIKKEHKETSKENEKLKRLLATQKLESMSLQEEIEERDKLIVKKGLVIISTEQDSNDNLDQNNKQIQRALVSVENAQFLQHATEGSLDVRLKKLTEERNSYLDEIKQLKLELQEAKCYSDSHFNGSDSDDLEDVQKESNKILGDYKFKWQKAEQDISTLQANVARLESQVIRYKAASEAGEKAEDELKLEKRKLQRELRESQAKVEELETSNMHLLKRFDKLKNAKSSLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00463344; iTF_01499642; iTF_00340565;
- 90% Identity
- -
- 80% Identity
- -