Dnox011724.1
Basic Information
- Insect
- Diuraphis noxia
- Gene Symbol
- lrrfip2
- Assembly
- GCA_001186385.1
- Location
- NW:635821-661548[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.8e-99 5.9e-95 317.5 33.3 1 300 32 329 32 329 0.92 2 2 0.0061 75 1.9 5.5 121 172 328 379 327 388 0.92
Sequence Information
- Coding Sequence
- atggatAGTCCTAGTTCAACAACTGGTGGTCGTCGAAGGCTTCCCACTACACATTATGCTGAAGACCAAGCATTTGACCAAATAGCAAAAGAAgcGGAAGCTCGTCTAGCTGCAAGACGTCAAGCTCGTGCTGAAGCTAGAGAAATTCGTATGCGAGAGATTGAACGGCAACAAAAAGAAGCCGAAGAAAATGCAGACAAAGCTTTTGACATGCATGCAGCAGaTGGATCTATAGCAAATCGAGTATCACGAGTAGCTGCTAGTACCAGTCCTAGAGCAGCCAGTTCGGTACATAATACTAACAGTTACCAATCTAGTCGACGTAATTCAGTTGATTCTCTTGATGAATCTACTCCTAACTTTCGAGATTTTAGGaTGGAATTAAAAGACTTAGAAGAAAAGTTTCGAAAAGCTATGGTACAAAATGCTCAACTTGACAATGAAAAGGCAGCTGTCACATATATGGTAGAATTGTATAAAGACAAGTACACCGATATTGAAGAAGAACTTAtgcatataaaacGAGAACATAAAGAAAGTTGTAGggaaaacgaaaaattaaaacgtttattGGCTACTCAAAAACTAGAATCTATAACACTTCAACAAGAACTAGAAGAACGTGATAAACTTATTGAggaaAAAGGATTAGTAATCATCAGCACAGAACAAGAATGTTGGAGTGAGAGTGACCAAtgcaatactaaaataaaacgtGCTTTAGTTTCTGTCGAAAATGCTCAATTGTTACAAGACGCAGGAGAAGGCtgtttagATGTACGACTCAAAAAGTTTACTGAAGAACGCAACAgctatataaatgaaattaacCAGCTCAAATTAGAGTTGCAAGAGGCCAAACGTCATAGTGATAACCATTACAATGGTACAGACTCAGACGATTTAGAAGATGCCCAAAaagaaACTAATAAAGTTCTTAGTGATTATAAATTCAAGTGGCAAAAGGCTGAACAAGATATTTCTACATTACAAgcaaatgtTGCTAGACTTGAGAGTCAAGTTATTAGATATAAAACAGCTTCTGAAGCATCTGAAAAAGCTGAAGATGAACTAAAATTGGAAAAACGAAAACTACAGCGTGagcttCGAGAAGCTCAAGCCAAAGTTGAAGAATTGGAGACATCCAATATGCATTTGTTAAAACGCTTTGATAAATTAAAGAATGCCAAATCTAGTTTATTAAAAGATTTATAA
- Protein Sequence
- MDSPSSTTGGRRRLPTTHYAEDQAFDQIAKEAEARLAARRQARAEAREIRMREIERQQKEAEENADKAFDMHAADGSIANRVSRVAASTSPRAASSVHNTNSYQSSRRNSVDSLDESTPNFRDFRMELKDLEEKFRKAMVQNAQLDNEKAAVTYMVELYKDKYTDIEEELMHIKREHKESCRENEKLKRLLATQKLESITLQQELEERDKLIEEKGLVIISTEQECWSESDQCNTKIKRALVSVENAQLLQDAGEGCLDVRLKKFTEERNSYINEINQLKLELQEAKRHSDNHYNGTDSDDLEDAQKETNKVLSDYKFKWQKAEQDISTLQANVARLESQVIRYKTASEASEKAEDELKLEKRKLQRELREAQAKVEELETSNMHLLKRFDKLKNAKSSLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00811981;
- 90% Identity
- -
- 80% Identity
- -