Tsal014865.1
Basic Information
- Insect
- Tuberolachnus salignus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_956483605.1
- Location
- OY101435.1:5865217-5877532[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1e-98 1.2e-93 314.1 29.5 1 300 32 329 32 329 0.94 2 2 0.01 2.4e+02 1.2 5.1 121 172 328 379 327 388 0.92
Sequence Information
- Coding Sequence
- ATGGATAGTCCAAGTTCAATTACTGGTGGTCGTCGAAGGCTTCCAACTACTCATTACGCTGAAGATCAAGCATTTGACCAAATAGCAAAAGAAgcTGAAGCTCGTTTGGCTGCAAGACGTCAGGCAAGAGCCGAAGCAAGAGAAATTCGCATGCGTGAAATTGAACGACAGCAAAAAGAGGCTGAAGAAAATGCAGATAAAGCTTTTGATATGAATGTAGCAGatggATCTAGTATAAATCGAGTATCTCGTGCAGTTTCATCAAATACTCCTCGATCAGCTAGTTCCATACTAAATTCAAACAGTTACCAATCTAGTCGACGTAATTCGGTCGACTCTCTTGATGATTCAACACCAAACTTTCGAGACTTTAGGATGGAACTAAAAGACCTCGAAGAAAAGTTCCGGAAATCTATGGTTCAGAATGCTCAACTGGATAACGAGAAAGCCGCTATAACATAtcttattgaattatataaagaTAAATACACAGATATCGAAGAAGAACTAATCCATATAAAaCGAGAATATAAGGAAAGTACCAGAGAAAATGATAAGTTAAAACGTTTATTGGCTACTCAAAAATTAGAATGTTTAACTCTTCGTCATGAATTACAAGAACGAGATAGACTAATTGAggaaAAAGGATTAGTTATTATCAGTACAGAACAAGAAGGGCCCGATGATAATAATCaaagcaataataaaataaaacgggcATTAGTTTCAGTTGAAAATGCTCAGCTATTACATGACGCGGGAGAAGGTTGTTTAGATGTACGACTTAAAAAATTCACCGAAGAACGCGATAGCTATGTACATGAAATTAATCGGCTCAAATTAGAATTGCAAGATGCCAAACGCCATAATGATCGTAATTTTAATGGTACAGACTCAGACGATTTGGAAGATGCCCAAAaagaatCAAACAGAGTACTTGGAAATTATAAGTTCAAGTGGCAGAAGGCTGAACAAGATATTTCTACATTACAagcaaatGTAGCTAGACTTGAAAGTCAAGTTATAAGATATAAAACAGCTTCTGAAGCATCTGAGAAAAGTGAAGATGATCTCAAACTAGAAAAACGAAAACTACAACGGGAGCTTCGAGAATCTCAAACGAAAATTGAAGAGTTGGAAACATCTAATATGCAtcttttaaaacgttttgataAACTTAAGAATGCAAAATCAAGTTTATTAAAAGATTTATGA
- Protein Sequence
- MDSPSSITGGRRRLPTTHYAEDQAFDQIAKEAEARLAARRQARAEAREIRMREIERQQKEAEENADKAFDMNVADGSSINRVSRAVSSNTPRSASSILNSNSYQSSRRNSVDSLDDSTPNFRDFRMELKDLEEKFRKSMVQNAQLDNEKAAITYLIELYKDKYTDIEEELIHIKREYKESTRENDKLKRLLATQKLECLTLRHELQERDRLIEEKGLVIISTEQEGPDDNNQSNNKIKRALVSVENAQLLHDAGEGCLDVRLKKFTEERDSYVHEINRLKLELQDAKRHNDRNFNGTDSDDLEDAQKESNRVLGNYKFKWQKAEQDISTLQANVARLESQVIRYKTASEASEKSEDDLKLEKRKLQRELRESQTKIEELETSNMHLLKRFDKLKNAKSSLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00811981;
- 90% Identity
- iTF_00340565;
- 80% Identity
- -