Cced014583.1
Basic Information
- Insect
- Cinara cedri
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_902439185.1
- Location
- CABPRJ010000999.1:172356-190905[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.2e-97 1e-92 310.8 28.8 1 300 32 329 32 329 0.93 2 2 0.01 2e+02 1.2 5.2 121 172 328 379 327 389 0.92
Sequence Information
- Coding Sequence
- ATGGATAGTCCAAGTTCAATAACTGGTGGTCGTCGAAGGCTTCCAACAACTCATTACGCTGAAGATCAAGCATTTGACCAAATAGCAAAAGAAGCTGAAGCTCGTTTAGCCGCAAGACGCCAAGCACGAGCTGAAGCACGAGAAATTCGTATGCGTGAAATTGAACGACAGCAAAAAGAGGCTGAAGAAAATGCAGATAAAGCTTTTGATATGAATGTAGCAGATGGGTCTAGTATAAATCGAGTATCTCGAGTTGTTTCATCAAATACTCCTCGATCAGCTAGTTCAATAATAAATTCAAACAGTTACCAATCTAGTCGACGTAATTCGGTTGACTCTCTGGATGAAACAACCCCAAATTTCCGAGATTTTAGGATGGAACTAAAAGACCTTGAAGAAAAGTTCCGGAAGTCAATGGTTCAAAATGCTCAACTTGATAATGAAAAAGCTGCTATAACATATCTTATTGAATTATATAAAGATAAATACACAGACATTGAAGAAGAACTAATACATATAAAACGTGAATATAAGGAAAGTACAAGAGAAAATGATAAGTTAAAACGATTATTGGCTACTCAAAAATTAGAATGTTTAACTCTTCGACATGAATTACAAGAACGAGATAGACTTATTGAGGAAAAAGGATTAGTTATTATCAGTACAGAACAAGAAGTGCCTCATGATAATAATCAAAGCAATATTAAAATAAAACGTGCATTAGTTACTGTTGAAAATGCTCAGCTATTACATGATGCCGGAGAAGGTTGTTTAGATGTACGACTTAAAAAATTCACTGAAGAACGAGATAACTATATACATGAAATTAATCGGCTCAAATTAGAATTGCAAGATGCCAAACGCCATAATGATCGTAATTTTAATGGTACAGACTCAGATGATTTGGAAGATGCCCAAAAAGAATCAAATAGAGTACTTGGAAATTATAAGTTCAAATGGCAAAAGGCTGAACAAGATATTTCTACATTACAAGCAAATGTAGCTAGACTTGAAAGTCAAGTTATTAGATATAAAACAGCTTCTGAAGCATCTGAGAAAAGTGAAGACGATCTCAAACTAGAAAAACGAAAACTACAGCGTGAGCTTCGAGAATCTCAAACGAAAATTGAAGAATTGGAAACATCGAATATGCATCTTTTAAAACGGTTTGATAAACTTAAGAATGCAAAATCAAGTTTATTAAAAGATTTATGA
- Protein Sequence
- MDSPSSITGGRRRLPTTHYAEDQAFDQIAKEAEARLAARRQARAEAREIRMREIERQQKEAEENADKAFDMNVADGSSINRVSRVVSSNTPRSASSIINSNSYQSSRRNSVDSLDETTPNFRDFRMELKDLEEKFRKSMVQNAQLDNEKAAITYLIELYKDKYTDIEEELIHIKREYKESTRENDKLKRLLATQKLECLTLRHELQERDRLIEEKGLVIISTEQEVPHDNNQSNIKIKRALVTVENAQLLHDAGEGCLDVRLKKFTEERDNYIHEINRLKLELQDAKRHNDRNFNGTDSDDLEDAQKESNRVLGNYKFKWQKAEQDISTLQANVARLESQVIRYKTASEASEKSEDDLKLEKRKLQRELRESQTKIEELETSNMHLLKRFDKLKNAKSSLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00811981;
- 90% Identity
- iTF_01499642;
- 80% Identity
- -