Hsem000489.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000002.1:4143814-4148657[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.7e-11 1.4e-08 34.6 0.0 4 39 182 218 179 222 0.89 2 4 1e-10 2.5e-08 33.8 0.3 2 39 234 271 233 274 0.92 3 4 1.2e-14 2.9e-12 46.4 0.0 2 45 289 333 288 333 0.96 4 4 1.1e-17 2.7e-15 56.1 0.0 1 42 340 382 340 383 0.95
Sequence Information
- Coding Sequence
- ATGCCAGGATCTGAAAGGCTCCGAGTGAAATGCGAACTGCCATCCGACGAAGAAGGAAGTAATTCACAATTCACTCATTCATTTGCTCATGAGctCCCATCGGAATACAAACCAATTAAATTGGAACCGAACTCACAAACAGACGAAAATGCATCAAGCAACCTTTTACAACATTTACAAAGCAGTGAGGTTCGTTTCCAGTGCGTGGAAGGTGCGCTGGAAGAGCTAGTGCCGGCGccggccgcgcccgccgccacaCCGGTCTGCGAGCAGTTACCCGCCACACACGACGCCTCCTTCGCGACACTGGAACCTGCCTCTTACCCTACTGCTGTGGGGTCATCGCTGATCGACAGGCACATACAAATGATGAGTGCTAGTGAAGTGGCTGATTCAGCGGACTTCGTGCCTCTGATGGCCATCAAAGATGAACCGACGTCGGAAGGAGAGCAGCAGCACTTGAGTGGCGATGACACAAGCGACTCGAATGGACCACCGCTGGAGTCCCACAGCCGCGGCAGTCCCAAGAGCTGGACTCAGCAGGACATGGAAAAGGCTTTAGAAGCTTTAAGAAAGCACAATATGAGTTTAACAAAGGCATCAGCGACGTACGGTATACCATCTACAACCCTCTGGCAGAGGGCGCATCGATTAGGGATCGACACTCCTAAAAAGGAAGGTGCCTCTAAATCCTGGAGTGAGGCAGACCTGCGAGGCGCGCTGCATGCGCTGAGAGCCGGTGCTATTTCCGCGAACAAAGCTAGCAAGGCTTATGGAATTCCCAGCAGTACTCTATACAAGATAGCTCGTCGCGAAGGCATCCGATTAGCAGCGCCTTTCAACGCAGCTCCAACAGCTTGGAGACGCGCTGACTTGGAGCGAGCTCTGCAAGCTATCCGATGTGGGGCAGCTTCCGTGCAACGAGCTGCCACGCAGTTTGGAATACCTACAGGAACTCTGTATGGGCGGTGTAAGCGAGAAGGCATCGAGCTGTCTCGCTCCAACCCAACTCCGTGGTCTGAAGACGCCATGGGAGAAGCGTTGGAAGCTGTTAGGGTGGGTCAAATGTCTATAAACCAAGCAGCGATTCACTACAATCTGCCTTATTCATCCTTGTACGGCCGCTTCAAGCGTTGCAAGTACCAACCAGTACAGGTCAGTGATTTTAACAATTAA
- Protein Sequence
- MPGSERLRVKCELPSDEEGSNSQFTHSFAHELPSEYKPIKLEPNSQTDENASSNLLQHLQSSEVRFQCVEGALEELVPAPAAPAATPVCEQLPATHDASFATLEPASYPTAVGSSLIDRHIQMMSASEVADSADFVPLMAIKDEPTSEGEQQHLSGDDTSDSNGPPLESHSRGSPKSWTQQDMEKALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQPVQVSDFNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00205043;
- 90% Identity
- iTF_00954333; iTF_00953437; iTF_01091614;
- 80% Identity
- -