Oiva021958.1
Basic Information
- Insect
- Oeneis ivallda
- Gene Symbol
- -
- Assembly
- GCA_029955525.1
- Location
- JARPMR010000014.1:24573468-24580917[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-10 3.4e-08 34.5 0.0 4 39 153 189 150 193 0.89 2 4 3e-10 6.1e-08 33.7 0.3 2 39 205 242 204 245 0.92 3 4 3.6e-14 7.2e-12 46.3 0.0 2 45 260 304 259 304 0.96 4 4 3.3e-17 6.6e-15 56.0 0.0 1 42 311 353 311 354 0.95
Sequence Information
- Coding Sequence
- ATGCCAGGATCTGAAAGGCTCCGAGTGAAATGCGAGCTGCCATCCGACGAAGAAGAAAGTGATTCACAGTTCACTCATTCATTTGCTCATGAGAGCTGCGAGGCTCGTTTCCAGTGCGTGGAAGGTGCGCTGGAAGAGCTAGTGCCGGCgccggccgcgcccgccgccacgCCCGTCTGCGAGCCGTTGCCTGCCACACACGAAGCCTCCTTCGCGACACTGGAACCGGCCTCCTACCCTACTGCTGCGGGGTCATCGCTGATCGACAGGCACATACAAATGATGAGCGCTAGTGAAGTGGCTGATTCAGCGGACTTCGTACCACTGATGTCCATCAAAGATGAACCCACGTCGGAAGGAGAGCAGCAGCATTTGAGCGGCGATGACACGAGCGACTCAAACGGCCCACCGCTGGAGTCCCACAGCCGCGGCAGTCCCAAGAGCTGGACTCAACAGGACATGGAAAAGGCTTTGGAAGCTTTAAGAAAACACAACATGAGTTTGACAAAAGCATCAGCCACCTACGGCATACCATCAACAACTCTCTGGCAGAGAGCGCATCGGTTAGGGATCGACACTCCTAAAAAGGAAGGCGCCTCTAAATCCTGGAGCGAGGCAGACCTGCGAGGGGCACTGCATGCGCTAAGGGCCGGTGCTATTTCCGCGAACAAAGCTAGTAAGGCTTATGGAATTCCCAGCAGTACTCTGTACAAGATAGCTCGTCGCGAAGGCATCCGATTAGCAGCGCCTTTCAACGCAGCTCCAACAGCTTGGAGACGCGCTGACCTGGAGCGAGCTCTGCAAGCCATCCGATGTGGCGCAGCTTCGGTGCAGAGAGCTGCCACGCAGTTTGGAATACCTACAGGAACATTGTATGGGCGGTGTAAGCGAGAAGGCATCGAGCTGTCTCGCTCCAATCCCACTCCGTGGTCTGAAGACGCCATGGGAGAAGCGTTAGAAGCTGTCAGAGTGGGTCAAATGTCTATAAACCAAGCAGCGATTCACTACAATCTGCCTTATTCATCCCTTTACGGCCGCTTTAAGCGATGCAAGTACCAACCCGTACAGCACCAACCGACACAACAGGATGTACCGACACATTCTGACACTGAGAACCAGCCACAGGAGCTATATTACCAACAAATGTCTCACGCTATGCTGGCTGAAGACATACACGGCCCCTACATAAACGATGTGGAACCTTCAAACATTCAGTACGCACAGATGTACTACACGCAGTGCAACGTCACCAGCTGA
- Protein Sequence
- MPGSERLRVKCELPSDEEESDSQFTHSFAHESCEARFQCVEGALEELVPAPAAPAATPVCEPLPATHEASFATLEPASYPTAAGSSLIDRHIQMMSASEVADSADFVPLMSIKDEPTSEGEQQHLSGDDTSDSNGPPLESHSRGSPKSWTQQDMEKALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQPVQHQPTQQDVPTHSDTENQPQELYYQQMSHAMLAEDIHGPYINDVEPSNIQYAQMYYTQCNVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00205043;
- 90% Identity
- iTF_00801716;
- 80% Identity
- -