Mjur006315.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995216.1:14599736-14629374[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.3e-11 1.7e-08 34.4 0.0 4 39 175 211 172 215 0.89 2 4 9.3e-11 3e-08 33.6 0.3 2 39 227 264 226 267 0.92 3 4 1.1e-14 3.6e-12 46.2 0.0 2 45 282 326 281 326 0.96 4 4 5e-18 1.6e-15 56.9 0.0 1 43 333 376 333 378 0.94
Sequence Information
- Coding Sequence
- ATGCCAGGATCAGAAAGGCTTCAAGTGAAATGCGAACTGCCATCAGACGAAGAAGAAAGTAATTCACAATTCGCTCATTCATTTGGTCATCAGCTCACATCAGAATACGTCCCTATTAAATTGGAACCTAATTTACAAGTAGACGACAATGCATCGTCGAATCTCTTGCATCATTTACAGTGTGTTGAAGGCGCGCTGGAAGAGCTAGTGCCTGCGCCGGCTGCACCCACCGCCACGCCTGTATGTGAACAACTGCCTTCCACCAATGATGCCTCCTTCGCGACACTAGAACCGGCCTCATATACTACTGCTGAGGGGTCATCACTCATCGACAGGCATATACAAATGATGAGCACCAGTGAAGTGGCCGATTCATCGGATTTTGTGCCTCTGATGGCCATCAAAGATGAACCCACGTCGGAAGGAGAGCAGCAACATTTAAGTGGTGACGATACAAGCGATTCAGGCGGTCCACCACATGAGTCCTTAAGTCGCGGCAGTCCTAAGAGCTGGACTCAACAGGACATGGAGAAGGCTTTGGAAGCTTTGAGGAAGCATAATATGAGTTTAACAAAAGCATCAGCGACCTACGGTATACCGTCAACGACCCTCTGGCAGAGGGCACATCGGTTAGGCATCGACACTCCGAAAAAGGAAGGTGCGTCTAAGTCCTGGAGCGAGGCAGACCTGCGCGGGGCGCTGCATGCACTAAGAGCGGGTGCTATAAGTGCCAACAAAGCTAGCAAGGCTTATGGAATCCCTAGCAGTACTCTATACAAGATAGCTCGTCGCGAAGGCATCCGCCTGGCAGCGCCTTTCAACGCCGCGCCGACCGCGTGGAGACGCGCGGACTTGGAGCGAGCTCTACAAGCTATCCGATGCGGCGCCGCCTCCGTGCAACGAGCCGCCACGCAGTTCGGAATACCCACAGGAACTCTGTATGGGCGATGCAAGCGAGAAGGCATCGAGTTGTCTCGTTCCAATCCCACTCCGTGGTCAGAAGATGCCATGGGGGAAGCATTGGAAGCTGTTAGAGTGGGTCAAATGTCTATAAACCAAGCAGCGATCCACTATAACCTGCCTTACTCGTCTTTGTACGGACGCTTCAAACGCTGCAAATATCAACCTATGCAGAACCAACCAATTCAACAAGACATACCAACACACTCCGACACGGAAAACCAGCCACAAGACTTGTATTATCAACAGATGTCCCAAACTATGCTCGCGGAGGATATACAAAGCCCCTACATGAACGATATGGAGACTTCGCATATTCAGTACGCACAGATGTACTACACTCCGTGCAATGTGTCCAGCTGA
- Protein Sequence
- MPGSERLQVKCELPSDEEESNSQFAHSFGHQLTSEYVPIKLEPNLQVDDNASSNLLHHLQCVEGALEELVPAPAAPTATPVCEQLPSTNDASFATLEPASYTTAEGSSLIDRHIQMMSTSEVADSSDFVPLMAIKDEPTSEGEQQHLSGDDTSDSGGPPHESLSRGSPKSWTQQDMEKALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQPMQNQPIQQDIPTHSDTENQPQDLYYQQMSQTMLAEDIQSPYMNDMETSHIQYAQMYYTPCNVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00205043;
- 90% Identity
- iTF_00801716;
- 80% Identity
- -