Hnig003417.1
Basic Information
- Insect
- Hemicrepidius niger
- Gene Symbol
- -
- Assembly
- GCA_963082805.1
- Location
- OY720159.1:45788023-45789432[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.015 3e+02 2.8 0.1 26 43 120 138 111 144 0.74 2 5 0.0018 35 5.7 0.0 22 45 146 169 137 176 0.84 3 5 0.0016 32 5.9 0.1 22 46 174 198 168 201 0.88 4 5 2.7e-05 0.55 11.5 0.2 21 51 201 231 197 232 0.88 5 5 0.00062 13 7.2 0.0 21 48 229 256 227 259 0.90
Sequence Information
- Coding Sequence
- ATGGAGAATGATGATCAGGATGTCGATTTTCAGTCAACATTAGAACCTGATGTTATTATTGATGATAGTTCGaatgaCAACCAATATTATGAAGAGGAAGGAGAAAACACAAATGATGAAATTGCAAACAACATACAAAAGCGGATTGGTCCAGAAGTATCACTTATACCAGTTAAAAGAACTCCAATCAAAATTAAGATGTTTAGTAAAGGGCCAATGTCGGAAAGTCACGAGCGTAAAGTACAAAGAACTATACAGAGATCTCCCAGACAAACTGTAAGACTGATATCTAAAGAAGAAATGGTACAAGTCGATAACGGTAGTACCAACACCAAACGAAAATCACTTCCATTAGAAAAATGTCCCATATGTAAAAAGTTCTTTCGTCGCATGAAAACTCATTTACAAAAGCATGCAAGCGTAAAACGAGACCCCAATGACCCTTTAACATGCAGGTTTTGCATGAAAGTTTTCAATACTGGTAGCAATTTAAGTATACATATGCGTACACACACAGGGGATAAGCCATATATTTGTGAAGTGTGCACAAAAGGATTTGCTCAATCGTGTAACTTGGTAAATCATATGCGCATTCACACAGGTGAACGACCGTATAAATGTCCACATTGTGACCGTGCTTTTACTCAATCAGGTAATTTGAGTAATCATGTAAGATTACACACTGATGAGAAGCCCTTTAAATGTCATTTTTGTGACAAAGCTTTTACACAATCGGGCAATCTCAATTCTCATATTAGAAACAATCATAAATTTGTAGATAATATCCGGGAGAATATCGAAAGTGAACTGAATATTGTTCAATAG
- Protein Sequence
- MENDDQDVDFQSTLEPDVIIDDSSNDNQYYEEEGENTNDEIANNIQKRIGPEVSLIPVKRTPIKIKMFSKGPMSESHERKVQRTIQRSPRQTVRLISKEEMVQVDNGSTNTKRKSLPLEKCPICKKFFRRMKTHLQKHASVKRDPNDPLTCRFCMKVFNTGSNLSIHMRTHTGDKPYICEVCTKGFAQSCNLVNHMRIHTGERPYKCPHCDRAFTQSGNLSNHVRLHTDEKPFKCHFCDKAFTQSGNLNSHIRNNHKFVDNIRENIESELNIVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00789735; iTF_00839091; iTF_00838930; iTF_00400213; iTF_00399970; iTF_00979037; iTF_00978812;
- 90% Identity
- iTF_00789735;
- 80% Identity
- iTF_00789735;