Ccup045651.1
Basic Information
- Insect
- Ctenicera cuprea
- Gene Symbol
- -
- Assembly
- GCA_958336395.1
- Location
- OY284494.1:14533217-14535552[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.028 5.5e+02 2.4 0.2 26 43 125 143 116 148 0.73 2 5 0.0023 45 5.9 0.0 22 47 151 176 144 183 0.83 3 5 0.0026 50 5.8 0.1 22 46 179 203 173 205 0.88 4 5 4.2e-05 0.83 11.5 0.2 21 51 206 236 202 237 0.88 5 5 0.001 20 7.0 0.0 21 48 234 261 232 263 0.90
Sequence Information
- Coding Sequence
- ATGGAGAATGATGAACAGGAAGTCGATTTTCAGTCAACATTAGAGCCTGATGTTATTATTGATGATAGTTCGAATGATAACCAGTATTATGAACATGATGGAGAAAACACGAGTGATGATATTGCGAACAACATACAAAAACGCATTGGTCCAGAAGTATCACTTATACCAGTTAAAAGAAGCCCCATCAAAATTAAGATGTTCAACAAATCACCTCGCAAAGACCCATTGTTGGAAGCTGAAGAATGTAAAGTACAAAGAATTATACAGAGATCTCCAAGGCAAACTGTAAGACTGATAACTAAAGAAGAAATTGTACAAGCCGAAAACGGTGGTAGTGCTAACACCAAACGAAAATCGCTTCCATTAGAAAAATGTCCCATTTGTAAAAAGTTCTTTCGTCGTATGAAAACTCATTTACAAAAACACGAAAGCGTCAAACGAGACCCCAACGACCCTTTAACGTGTCGGTTTTGCATGAAAGTTTTTAACACCGGTAGTAACTTAAGCATACACATGCGCACACATACAGGGGACAAACCGTATATATGTGAAGTGTGCACAAAAGGGTTTGCCCAATCGTGTAACCTGGTAAATCATATGCGCATTCACACGGGTGAAAGGCCATATAAATGTCCACATTGTGACCGTGCTTTTACACAATCGGGTAATCTGAGTAATCACGTAAGATTACATACTGAtgagaaacctttcaaatgccACTTTTGTGACAAAGCTTTTACACAATCGGGCAATCTCAATTCTCATATTAGAAACAATCATAAATTTCTAGATAATATCCGGGATAATATCGAAATTGAACTGAATAATATTGTTCAGTAG
- Protein Sequence
- MENDEQEVDFQSTLEPDVIIDDSSNDNQYYEHDGENTSDDIANNIQKRIGPEVSLIPVKRSPIKIKMFNKSPRKDPLLEAEECKVQRIIQRSPRQTVRLITKEEIVQAENGGSANTKRKSLPLEKCPICKKFFRRMKTHLQKHESVKRDPNDPLTCRFCMKVFNTGSNLSIHMRTHTGDKPYICEVCTKGFAQSCNLVNHMRIHTGERPYKCPHCDRAFTQSGNLSNHVRLHTDEKPFKCHFCDKAFTQSGNLNSHIRNNHKFLDNIRDNIEIELNNIVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00789909;
- 90% Identity
- iTF_00399970;
- 80% Identity
- iTF_00399970;