Basic Information

Gene Symbol
-
Assembly
GCA_958496145.1
Location
OY292348.1:4606786-4626803[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.45 29 5.7 0.7 2 23 491 512 490 512 0.91
2 18 0.044 2.8 8.9 0.1 1 23 522 545 522 545 0.95
3 18 0.065 4.2 8.4 2.9 1 21 668 688 668 689 0.94
4 18 0.042 2.7 9.0 3.8 2 23 752 773 751 773 0.95
5 18 0.85 55 4.9 1.3 1 23 785 809 785 809 0.90
6 18 0.00016 0.01 16.6 0.3 2 23 816 839 815 839 0.97
7 18 0.17 11 7.1 0.3 1 23 845 867 845 867 0.93
8 18 0.004 0.26 12.2 2.9 1 23 873 895 873 895 0.98
9 18 0.19 12 6.9 0.1 2 19 906 923 906 926 0.91
10 18 0.052 3.4 8.7 0.2 1 23 1005 1027 1005 1027 0.97
11 18 2.4 1.6e+02 3.4 7.2 1 23 1034 1056 1034 1056 0.95
12 18 0.0016 0.11 13.4 1.8 1 23 1098 1121 1098 1121 0.95
13 18 0.00027 0.018 15.8 0.7 1 23 1128 1151 1128 1151 0.98
14 18 0.018 1.2 10.1 0.2 2 23 1173 1195 1172 1195 0.96
15 18 0.0032 0.21 12.5 5.0 3 23 1221 1242 1220 1242 0.95
16 18 0.00036 0.023 15.5 1.2 1 23 1256 1278 1256 1278 0.96
17 18 0.00014 0.0094 16.7 0.1 1 23 1284 1306 1284 1306 0.97
18 18 0.00046 0.03 15.1 0.7 3 23 1314 1335 1312 1335 0.95

Sequence Information

Coding Sequence
ATGACAGAGACGCAGCCCCCACTGATTCTCTGCATGGAGAATGCAACTGGTGAAGAAGTAGCCCTCAGGGTCGAACCTGATGATAATTTCCAGATGTTTCTTGATAAGGCTAGGGGACTCCTAGGCTTTGATGTCGACCTAAACTCCATAACCAGAAACCAGCCAGTTTCCCTATCCGAAAACATATACCAATTCCTAATAAACACTGAACAAAATTTACAAGGTGATGACCTTACACAAAACTTTGATCAAATGTTGGACCCAAATGATGGAGCCAATGATTTGGTCTACATACTAGACGATGGCACTCAGATTCGGGCTTCCCAAATACATTTCGATAATGACGACCCTTTAATAGATCTGACCGCTGAAAAAATACCATTTGTGAAATACGCCGATGATGTTAATGATATTGAAATAGATACCAGTCATGCAGAaactaagaaaattaatatcgtTGAGAGTCCTGTTTCGAGATGGTCCAGCAAAAATTCTAGTCCTAAATGCAGTTTTGTCAATTCATTGCCTTTTAAATTAGTCTGTAACAACACATCGGGTTTCGAAGCCCAGTTCACGAAATATTTAGAAGCCAATAATTCTAAAACGTACGCGACTTTGAACCCTGTTACTAGCCGTAATAAGTCCCCAAAAAGCTTGATCAAGGACAATTTTAAGAACTACGATGATAATTATCAGAGGAACGACAATTTGGCTTACACTCGGGAAGAGATTTTGAATATGTTCAAAGATTCCCCGATGACGTCATTGCCTTATGACCAGGGTTACAGCGAACGAAGACATGTGAGAAAAACCGATCCTTCTAGACTTGTGCATAAGAGTTGGACCAAGCCTATATCGTACATCGATATCGATGGGGTACTAATAGGTGAGACTGAGAGTCAGATATGTTTCATTTGTGGAAAACATGTCGATAACAGTGTCGATAAACTGTACCTTTTTGACAATGAGGACCAGAGAGTACACAGGTGCTCCCCCCAAAAGAAAATGTCGACGCAATTGAAGATTATATGCGAATGCTGTCTCAACGAAAATTTTAAACCTTGCCGGATGAAGAGTGCGAACCAATTTTTGAACCCGGACGAGTTTTTGGTCATACGTAACAATCAACAGTATATCTTTCAGaagattaaaaactttaatttcaaGCATTTAGGTAAACATAAAGACATGATGAGTAAACAAGATTCTAAGTTAGATAAAGAGGAATTTGTGAAAGTCGAGATCGGATCCGACGGTGAGATCATCACGAAGCCCATAGACAATGATCCGAGGTCCGATGAAGTCATCATTGTCAAAGATGAGAAGAAGGAGGGTAGTTCGAGTGACGTAGAGATAGTAGAACCGGAACCGGAGATAGATAATATCATAGACAATTTGGAGGAGGCTGATGAGGAAGTGAAGGAATTTTTGGGGAAATATCAGTGTGATAATAGTGAAGTAACTGAGCTGAAATGCAGATTTTGCGAACAAGTATTCCCGGATTTATCAGAAGTGATGGTGCACTGTGAGACTCATAAACACGATTTGGAAGATGGCGACGTGTTTCCGTGTCCTCTTTGTTTCTATGGTTACGCAAATTTAAAATGGCTGAAAGGTCACCTGAAGGCAGCTCACGAGAAGTCggaatctaaaaaaaatattaaagatgaAAGTGAACAAACGAACCCAGAGAATAAAGATGAACAGGGGAAATCGCCTAAAACTTCGTCTCCTATAGCTACTCGTACAAGAAGTTCTAGCAAAAAAGGAGATGGCGATAGAAACGATAACGAAGACTCAGAAGATAATAATCAATCTAGTAAAGAAGCgCCAGAGCCACCCATCATAAAAACGGAGGTTAAGCAGGAATGCGTGGACAGCAGTGAGGATGAGATCTGGATCGTTCAAACTGCAGACGTTGAAGCTTCGCAAGAGTTGCAGAAATTACTCTGTGTTGCcaagGGCAAAGAGGAGGGGCAGGGGGGTGATACCCAGAAGACACACAAATGCTTTAATTGCAGTCAAATATTTGCAAGTTCAGAGGGCTTGACGAACCATAGATGTCGAAGACGGGGCCGGAAGCGGAAGTCTAAAGATCTAGGCAATCTTATTTGTATACCGACAGAAGAAGATTTCTTgaagAGAGCCCAGGGCCGGCCAAGACAGCTAGAAACTGCTATAGACAGCGATCTTCTAGTCATGCGTCCCAGAAAGCGCCGCAGCCGGGAACCGACCTCCAACCCTCAAGTTGTGACTTGCCACAATTGTAACGAATCATTCACTTCCAAAGTTAGACTTAAGTTTcatatGCAGTTCCACGAGTCCACAAACCTGATGCGTCCAGACGGTCGCTACACTTGCACCGAGTGCTCTGGCGCCACCTTCTCCACGGAGACGGAACTGTTCGACCATGTCCACTTCCAGCATGACAAGCACAAGCGCTGGCAGTGTCCTGTCGACGGCTGCGGGAAGACGTTCTTTCTCAGGGCAACCCTAACGAAACACAGTCGCACGCACACAGACACACGTCGTTACGTATGTGTTACATGCGACAAGCGGTTCTTAGACAAACAGACTTTGGACGAACATGGAGTTACACATTTACAGATCAAGCCGTTCCAATGCCACATATGCCTGAAGCAGCTGACGCGCCGCTCGCGCCTGCGCATGCACGTGCGCGCGCACGAGGAGGAGCTGGCGCCCACGCTGGTGCGCGTCTGCGCCGTCTGCACCCGCGCCTTCCGGGACCTCAGCCATGCTCAGGAGCACGCAACAAAATCAACAGAATGCATAGAGGCATTCGCTAACGAGTTGAAGGAAGAGGCTGAGGAGATGGCGGTCCAGCTGTCTCCCACCAGCGGCCTCGTCAGGCATACCGTGCAGATTGTagAGTCCCCAAAACTCTCGAAGCCAATAAAACGTCAAGTATCGAATGAAGTGGGAGAGCCGCTTCTGGCGCAGCTGGCGGACGAGGCTAGGACGCTCATACGGGTCGTCGAGATCGAGAAGGCATTCCGCTGCGAATATTGTGAAGACGTGTTCTACTTAGAGAGCGGTTTAAACAGTCATCGCGCAATACATAAGGGAGTGAAGAACCCTTTCACTTGTCACATATGTAAAGTGAGCTTCGCTACTTATTCCAGaTGTACGACCCACAAAACGACACATGGGTTTTACAAGCGATCTCTAGCGGACGCCAAGAAACAAGCGGATGGCTTGACAGCTGATACAGATGTCAATCGATCAGCCACCGGCATCCTGGGTTACGGGGACTTTCCGGTAGTCAAGCATTTCTTGTGCGAGGACTGCGGCCGGTCGTATCTACACTGGACGTACTTGCAAGTGCACAGACGTATGAAACACGCTAACGAGAACTTTCTATACAAATGTAACCAGTGTGAACTCACATTTCCTAACAGTTGGAGCCTAGCGTACCATCGTAAGAAGGTGCACGGTAAAACCGGTCCTGATGACCCTGGCGCCACCAGCAAGATCAGCAAGGATGATTACAGgaTACCATGTCGAGATTGCAGCGAGGTTCTGCCAAATAAAACTGCTCTTTACAAGCATCGGAAGAAAGAGCACAGTGATAATATCACTCGCCCTTATAATAAGCCtgGAATGTATACGAATGAGGAGTCCAGTACCAGCGGTGGCGCGTGCCCGCACTGCCACGCTACCTTCACGCACGCCACCGATCTTCACAAACATGTCAAAGAGGCGCACGGCGCTATGGGCGCGGCGTGGGGGCGGGCGGGGCGGCCGCACGCGTGCCCCGTGTGCGGGCACGCCTTCCGCACGCTGTCCATGCGCAACGAGCACCTGCGCGTGCACACCGGCGAGCGGCCCTTCCCCTGCGACGTCTGCGGCGTCGCCTTCAGAAGGTCGACAGCGATGAGGAACCACCGTCTCATTCACACGGGTGTCCGGGCCTGGGCATGCGGACGGTGTCCGAAACGATTCCGCATACGTTCCGACTTACGCACGCATCTGAGGCTAAAGCACCCCGCTACTATTGTCGTTGTTGAGATGGAAGGACTGAACCCGACTTCGGAAGACGTGATGAAGACGCTTGCAGAGCAGAACGTTCCTCACGACAAGCTCATTGAGATAACCAAGATGTCTTTCCCAAAGGGCACGTCGAGCGTGATACCGTCGTGTGCGCGCGCGCTGTCGGCGCTGAGCACGGTGCCGCGCACGCACGTCGCCTGCATCAAGCCGACGCCTGCGCTCATGTtGGATGAATTCCAACCAGCTCGCCGCGGTCGCGGCATTGCCAAGAACCCGCGCCGCCCCAAGATATTGCAGCGAGGAGATAGCACACAACAAGATCCCTCTGCGTACCCCATCGTTAGTGGAGAGGAGTTATCAGACTTGAACGTTCAGTTACTGCTCAGAGATGGCGTGCTAGTTAACGGTAACCAGATGGTTCAACTACAACTAGACGACCCTATACTCATGGAATGA
Protein Sequence
MTETQPPLILCMENATGEEVALRVEPDDNFQMFLDKARGLLGFDVDLNSITRNQPVSLSENIYQFLINTEQNLQGDDLTQNFDQMLDPNDGANDLVYILDDGTQIRASQIHFDNDDPLIDLTAEKIPFVKYADDVNDIEIDTSHAETKKINIVESPVSRWSSKNSSPKCSFVNSLPFKLVCNNTSGFEAQFTKYLEANNSKTYATLNPVTSRNKSPKSLIKDNFKNYDDNYQRNDNLAYTREEILNMFKDSPMTSLPYDQGYSERRHVRKTDPSRLVHKSWTKPISYIDIDGVLIGETESQICFICGKHVDNSVDKLYLFDNEDQRVHRCSPQKKMSTQLKIICECCLNENFKPCRMKSANQFLNPDEFLVIRNNQQYIFQKIKNFNFKHLGKHKDMMSKQDSKLDKEEFVKVEIGSDGEIITKPIDNDPRSDEVIIVKDEKKEGSSSDVEIVEPEPEIDNIIDNLEEADEEVKEFLGKYQCDNSEVTELKCRFCEQVFPDLSEVMVHCETHKHDLEDGDVFPCPLCFYGYANLKWLKGHLKAAHEKSESKKNIKDESEQTNPENKDEQGKSPKTSSPIATRTRSSSKKGDGDRNDNEDSEDNNQSSKEAPEPPIIKTEVKQECVDSSEDEIWIVQTADVEASQELQKLLCVAKGKEEGQGGDTQKTHKCFNCSQIFASSEGLTNHRCRRRGRKRKSKDLGNLICIPTEEDFLKRAQGRPRQLETAIDSDLLVMRPRKRRSREPTSNPQVVTCHNCNESFTSKVRLKFHMQFHESTNLMRPDGRYTCTECSGATFSTETELFDHVHFQHDKHKRWQCPVDGCGKTFFLRATLTKHSRTHTDTRRYVCVTCDKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELAPTLVRVCAVCTRAFRDLSHAQEHATKSTECIEAFANELKEEAEEMAVQLSPTSGLVRHTVQIVESPKLSKPIKRQVSNEVGEPLLAQLADEARTLIRVVEIEKAFRCEYCEDVFYLESGLNSHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQADGLTADTDVNRSATGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYKCNQCELTFPNSWSLAYHRKKVHGKTGPDDPGATSKISKDDYRIPCRDCSEVLPNKTALYKHRKKEHSDNITRPYNKPGMYTNEESSTSGGACPHCHATFTHATDLHKHVKEAHGAMGAAWGRAGRPHACPVCGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRSTAMRNHRLIHTGVRAWACGRCPKRFRIRSDLRTHLRLKHPATIVVVEMEGLNPTSEDVMKTLAEQNVPHDKLIEITKMSFPKGTSSVIPSCARALSALSTVPRTHVACIKPTPALMLDEFQPARRGRGIAKNPRRPKILQRGDSTQQDPSAYPIVSGEELSDLNVQLLLRDGVLVNGNQMVQLQLDDPILME

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00786223;
80% Identity
-