Hnum028689.1
Basic Information
- Insect
- Heliconius numata
- Gene Symbol
- -
- Assembly
- GCA_016802625.1
- Location
- JAEBDU010000038.1:506810-511280[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.02 2 9.7 1.0 1 23 70 93 70 93 0.95 2 26 0.065 6.5 8.1 3.2 2 23 165 186 164 186 0.97 3 26 0.18 19 6.7 0.9 1 17 190 206 190 212 0.86 4 26 0.18 18 6.7 0.7 1 23 217 240 217 240 0.95 5 26 1.2 1.2e+02 4.1 6.5 1 23 247 270 247 270 0.95 6 26 0.0038 0.39 12.0 1.0 2 23 278 300 277 300 0.96 7 26 0.00088 0.089 14.0 1.9 1 23 306 328 306 328 0.95 8 26 0.00018 0.019 16.1 2.0 1 23 334 357 334 357 0.98 9 26 0.28 28 6.1 0.2 3 23 425 446 423 446 0.93 10 26 1.1 1.1e+02 4.3 0.3 2 23 472 494 471 494 0.93 11 26 0.1 10 7.5 0.4 2 23 517 538 516 538 0.96 12 26 0.00035 0.035 15.3 0.7 3 23 544 564 542 564 0.96 13 26 2.9e-06 0.00029 21.8 0.9 1 23 569 592 569 592 0.98 14 26 2.2 2.2e+02 3.3 0.3 2 23 600 622 599 622 0.83 15 26 0.00016 0.016 16.3 0.6 2 23 630 652 629 652 0.96 16 26 7.5e-06 0.00075 20.5 1.5 1 23 658 680 658 680 0.98 17 26 2.9e-05 0.003 18.6 4.1 1 23 686 708 686 708 0.99 18 26 0.00024 0.024 15.8 2.7 1 23 714 737 714 737 0.97 19 26 0.0046 0.46 11.8 0.9 1 23 801 824 801 824 0.94 20 26 0.66 66 5.0 0.1 2 23 851 873 850 873 0.93 21 26 0.044 4.5 8.7 0.2 3 23 897 917 895 917 0.92 22 26 0.27 27 6.2 0.0 1 21 921 941 921 943 0.88 23 26 0.17 17 6.8 1.7 1 19 948 966 948 971 0.83 24 26 0.001 0.11 13.8 0.9 2 23 1009 1031 1008 1031 0.95 25 26 0.0092 0.93 10.8 3.9 1 23 1037 1059 1037 1059 0.97 26 26 0.0015 0.15 13.3 2.0 1 23 1065 1088 1065 1088 0.98
Sequence Information
- Coding Sequence
- ATGCATGATAATAAGTCAAGTAAATCTCACAAAACATCCAAAGCATCATTGGACACTTCTCAAGAGGATGAAATTGTTGCTATAAATAAAGAAGACGTACTTCCTAAAGCTAGGCAAGGAGAACATTTGGAAAAACATAGAAACAATATAAGGGAAGTTATTCTTTCGTCGAACGCTACGCCGATTAGGTGTCGAGGTGGCATTGGTTATGCGTGTTGTTTTTGTTCCAGTCAGTTTCCTGATCCTGCAGACTTAAAGAAACATACGATTAAAGATCATGACGATAAGACGAAAGCAATATTTATGAAAGGGCGGGATATGTACGGATACTTAGTTAAATTAGATATTACAGGATTAGAATGTAATCTATGTAGATCAAGGCTGGAGACTCTAGAGAAAATTTTGGAGCACTTAAAAGACGCTCATAGTAAGAATATCAGCACAGAGATACCTAACCATATTTTGCCTTTCAAATTCGACAATGAATATTTAAGGTGCTTCATGTGTCAAAATATTTTCAACAAATTTAAAGCTCTCCAAGAACACATGCATACACATTACCGAAATTATATTTGCAAAATCTGCGACGCTGGATTTGTTAATCGTCATCTTCTATTATGTCACAACGAGGGCCATAAAACTGGTACCTTTGCTTGTGAACAATGCAATCTAGTTTTTGACACTGTTAGAAAGAAGAAATTGCATGAAAGAAAAATCCATAATGGCTTAAACATGCCCCACAAATGTGGATACTGCAGTGAGAGGTTTAGGGAGAATTGTCACAAAAATGAACACTTAGCGAAAGTACATGGTGTCGTTGGACCAACAATTAAATGTCAAGCTTGCGACAAGACGTTTACATTGCAGCAGACTTGGTTACTGCACATGAAAAAGTATCACTTGCTGCAGAAGAAACATGACTGCACGACATGCGACATGGCCTTTTTTTCTAAGCGGGAGTTAACAGACCACATGGTCAAACACACGGGAACGAGAGAGTTCAAATGTGAAGTTTGCAAGAAATCGTACGGCAGATTAAAGACATTAAAAGAACACGTGAAGAGGCAACACCCACAAGATTGTTTCTATAAATGTATACGAACCATTAAAATCGAAAGGCGTTTATCAACACCTCGAGTCGAGTTGAAGATCATTCGGGGCACCAGGCAGCCTAAACTATCGGATGCCAGAAAAAACCAACAAAATCTTATGACCATTTTGCTTTGTTCCAATGCCAATCCTATCAGATCGAAGGATAGTCTTGGATACGGCTGTGCGTTTTGTCTCGAACAGTTTCAGAGTCCGACCGACCTTAAGAAACATTTTTTAGTAGAACATAACAACGACAGATTAATTCAGTACATGACGTCCAGATTGTTTGAACATGTCGTTAAATTAGACATTACCTACTTAAGTTGTTCCCTTTGCAGCACTGGTATAGCCAAATTGGAGGACTTGATGCATCACTTGAAGGATGAGCATAAAAAAGAAATACACACAGACATAAACAACACTATAGTACCATTTAAATTCGACACGCCGGAACTTAGATGCGCAATTTGTTCCACGGAATATCTAAACTTCAAACTGTTACAGGAACATATGAACACTCATTTTGGATACCATTTATGCCCACTGTGTAGCCGAGGCTTTGTTACTGAGCGCCTTTTAGCCACTCACATCAGGAGACATGACAATGGTGTATACAAATGTCAAGAGTGCGATAAAGTATTTGGCAATAACGAGAGGTTAAAGGAACATCAGAGACGGATTCATTTAGGGTTCAACAAACGCAACAAATGTATGATATGTGATGAACGTTTCATGGATTACTGGAGGAAGGTCGATCATATGGTCAAAGTGCATGGAGCACCACCAGTAGTTATAAAATGCCAAGCTTGCGATCGCACGTTTATCAACCAGAGAGCTCTGGCGCGGCACACTAAAAAAGACCATCTTATGGAAAAAAAGCACCAATGTGAAGAATGTGATATGAGATTCTTCAGCGCTAGCGGACTAAAGCGTCATATGGCGAAGCATACAGGACTGCGCGAGTTCAGATGTGATATTTGCTTCAAATGCTATGGCAGAAAGACTACATTACGGGAACATATGCGTATACATGCAGACGACCGCAGGTTTGCCTGTAGTAGATGTGGTCAGGCTTTCGTACAAAAGTGCAGTTGGAAAAGTCACATGAGATCCAAACATGGTGACCAGAAACTAACAATTCCAACAAATGTGGGAAGAAAAGACCGAAAAGGCAAAACCATACGAATAACTGTCGAACATAAACTAAATATGGTGATTGTGTCAGAGGTGGAAAAACATCAAAATAATATAAAAGAAATTTTATTGAATACGAATGCTACGCCCATTCGTTGTAAGGGAGGCATCGGTTATGCGTGTTGTTTTTGCTCTGAGCAGTTTCCTGATCCAAAAGATTTAAAAGCACACACCCAAGAATCTCACAACGCTGAAGAGAAATCTACCTTTATGAAAGGGAAAGACATGCACGGCTATTTCGTTAAATTAGATATCACAGACGTTAAATGCCAAATTTGTGGAGAAACCATGGAAAGTGTAGACAAAGTAGTTAACCATCTGCAAATGAATCACGATAAGAAACTTTATACGGACATTAAGGATCATATACTGCCCTTTAAATTTGGCAATGGACCACTCAACTGTATTATATGTTCGAACGTATTTAACTCTTTCAAAGCTCTCCAAGAACACATGAATGTTCATTATAGTAACTATTCATGTCTAGTCTGCGGTGCAGGTTTCGTTAATAAGAACATCCTTCTAAGACACGGAGATGCCCACAAAATAGGAACGTTTACCTGCGAAATATGTTCCAGAACCTTCGATACGGAGCGAAAAAAGCGATTGCATGATCGATCAAGACACGCCGGAATAAAATTACCTCATAAATGTGGTTATTGCATGGAAAGATTTAAAGAAGTTTGGAAGAAACAAGAGCATTTGGTTAAAGTCCATGGAGTTAAGAGTCCAGGGATCAAGTGCCAAGCGTGTGACAAGAGTTTCGAAAGCAAACATTCTTGGAGGCTGCATATAGCAAGAGTGCATCTCTTGCAAAGACCACACAAGTGTCAGCATTGTGAGATGGAGTTTTATGCTAAGAAGGAGTTAGAGAGCCACATGGTGAAACATACTGGTTCTAGGGAATTTAAATGTGAATCATGTTTCAAGACATACGGACGATTGAAGACCTTAAAGGAACATGTCCGAAAAGTACACGCTTGA
- Protein Sequence
- MHDNKSSKSHKTSKASLDTSQEDEIVAINKEDVLPKARQGEHLEKHRNNIREVILSSNATPIRCRGGIGYACCFCSSQFPDPADLKKHTIKDHDDKTKAIFMKGRDMYGYLVKLDITGLECNLCRSRLETLEKILEHLKDAHSKNISTEIPNHILPFKFDNEYLRCFMCQNIFNKFKALQEHMHTHYRNYICKICDAGFVNRHLLLCHNEGHKTGTFACEQCNLVFDTVRKKKLHERKIHNGLNMPHKCGYCSERFRENCHKNEHLAKVHGVVGPTIKCQACDKTFTLQQTWLLHMKKYHLLQKKHDCTTCDMAFFSKRELTDHMVKHTGTREFKCEVCKKSYGRLKTLKEHVKRQHPQDCFYKCIRTIKIERRLSTPRVELKIIRGTRQPKLSDARKNQQNLMTILLCSNANPIRSKDSLGYGCAFCLEQFQSPTDLKKHFLVEHNNDRLIQYMTSRLFEHVVKLDITYLSCSLCSTGIAKLEDLMHHLKDEHKKEIHTDINNTIVPFKFDTPELRCAICSTEYLNFKLLQEHMNTHFGYHLCPLCSRGFVTERLLATHIRRHDNGVYKCQECDKVFGNNERLKEHQRRIHLGFNKRNKCMICDERFMDYWRKVDHMVKVHGAPPVVIKCQACDRTFINQRALARHTKKDHLMEKKHQCEECDMRFFSASGLKRHMAKHTGLREFRCDICFKCYGRKTTLREHMRIHADDRRFACSRCGQAFVQKCSWKSHMRSKHGDQKLTIPTNVGRKDRKGKTIRITVEHKLNMVIVSEVEKHQNNIKEILLNTNATPIRCKGGIGYACCFCSEQFPDPKDLKAHTQESHNAEEKSTFMKGKDMHGYFVKLDITDVKCQICGETMESVDKVVNHLQMNHDKKLYTDIKDHILPFKFGNGPLNCIICSNVFNSFKALQEHMNVHYSNYSCLVCGAGFVNKNILLRHGDAHKIGTFTCEICSRTFDTERKKRLHDRSRHAGIKLPHKCGYCMERFKEVWKKQEHLVKVHGVKSPGIKCQACDKSFESKHSWRLHIARVHLLQRPHKCQHCEMEFYAKKELESHMVKHTGSREFKCESCFKTYGRLKTLKEHVRKVHA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00782813;
- 90% Identity
- iTF_00782813; iTF_00775434; iTF_00776175; iTF_00778907;
- 80% Identity
- -