Basic Information

Insect: Heliconius charithonia
Gene Symbol: -
Assembly: GCA_030704555.1
Location: CM060824.1:710457-715926[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.023 1.8 9.7 1.1 1 23 74 97 74 97 0.95

2 27 2.1 1.6e+02 3.6 0.0 2 23 124 146 123 146 0.93

3 27 0.074 5.7 8.1 3.2 2 23 169 190 168 190 0.97

4 27 0.4 31 5.8 1.0 1 17 194 210 194 216 0.86

5 27 0.06 4.6 8.4 0.6 1 23 221 244 221 244 0.96

6 27 1.4 1.1e+02 4.1 6.5 1 23 251 274 251 274 0.95

7 27 0.0044 0.34 12.0 1.0 2 23 282 304 281 304 0.96

8 27 0.002 0.15 13.1 2.1 1 23 310 332 310 332 0.95

9 27 0.00021 0.016 16.1 2.0 1 23 338 361 338 361 0.98

10 27 0.24 18 6.5 0.2 3 23 428 449 426 449 0.93

11 27 0.39 30 5.9 0.3 2 23 475 497 474 497 0.93

12 27 0.12 8.9 7.5 0.4 2 23 520 541 519 541 0.96

13 27 0.0005 0.038 15.0 0.7 3 23 547 567 545 567 0.96

14 27 3.3e-06 0.00025 21.8 0.9 1 23 572 595 572 595 0.98

15 27 2.5 1.9e+02 3.3 0.3 2 23 603 625 602 625 0.83

16 27 0.00019 0.014 16.3 0.6 2 23 633 655 632 655 0.96

17 27 8.6e-06 0.00066 20.5 1.5 1 23 661 683 661 683 0.98

18 27 3.4e-05 0.0026 18.6 4.1 1 23 689 711 689 711 0.99

19 27 0.00027 0.021 15.8 2.7 1 23 717 740 717 740 0.97

20 27 0.0053 0.4 11.7 0.9 1 23 804 827 804 827 0.94

21 27 0.15 11 7.2 0.1 2 23 854 876 853 876 0.95

22 27 0.24 19 6.5 0.2 5 23 902 920 898 920 0.90

23 27 0.49 38 5.6 0.0 1 21 924 944 924 946 0.88

24 27 0.1 8 7.7 1.5 1 19 951 969 951 974 0.84

25 27 0.0012 0.092 13.8 0.9 2 23 1012 1034 1011 1034 0.95

26 27 0.011 0.81 10.8 3.9 1 23 1040 1062 1040 1062 0.97

27 27 0.00062 0.048 14.7 1.6 1 23 1068 1091 1068 1091 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.023	1.8	9.7	1.1	1	23	74	97	74	97	0.95
2	27	2.1	1.6e+02	3.6	0.0	2	23	124	146	123	146	0.93
3	27	0.074	5.7	8.1	3.2	2	23	169	190	168	190	0.97
4	27	0.4	31	5.8	1.0	1	17	194	210	194	216	0.86
5	27	0.06	4.6	8.4	0.6	1	23	221	244	221	244	0.96
6	27	1.4	1.1e+02	4.1	6.5	1	23	251	274	251	274	0.95
7	27	0.0044	0.34	12.0	1.0	2	23	282	304	281	304	0.96
8	27	0.002	0.15	13.1	2.1	1	23	310	332	310	332	0.95
9	27	0.00021	0.016	16.1	2.0	1	23	338	361	338	361	0.98
10	27	0.24	18	6.5	0.2	3	23	428	449	426	449	0.93
11	27	0.39	30	5.9	0.3	2	23	475	497	474	497	0.93
12	27	0.12	8.9	7.5	0.4	2	23	520	541	519	541	0.96
13	27	0.0005	0.038	15.0	0.7	3	23	547	567	545	567	0.96
14	27	3.3e-06	0.00025	21.8	0.9	1	23	572	595	572	595	0.98
15	27	2.5	1.9e+02	3.3	0.3	2	23	603	625	602	625	0.83
16	27	0.00019	0.014	16.3	0.6	2	23	633	655	632	655	0.96
17	27	8.6e-06	0.00066	20.5	1.5	1	23	661	683	661	683	0.98
18	27	3.4e-05	0.0026	18.6	4.1	1	23	689	711	689	711	0.99
19	27	0.00027	0.021	15.8	2.7	1	23	717	740	717	740	0.97
20	27	0.0053	0.4	11.7	0.9	1	23	804	827	804	827	0.94
21	27	0.15	11	7.2	0.1	2	23	854	876	853	876	0.95
22	27	0.24	19	6.5	0.2	5	23	902	920	898	920	0.90
23	27	0.49	38	5.6	0.0	1	21	924	944	924	946	0.88
24	27	0.1	8	7.7	1.5	1	19	951	969	951	974	0.84
25	27	0.0012	0.092	13.8	0.9	2	23	1012	1034	1011	1034	0.95
26	27	0.011	0.81	10.8	3.9	1	23	1040	1062	1040	1062	0.97
27	27	0.00062	0.048	14.7	1.6	1	23	1068	1091	1068	1091	0.98

Sequence Information

Coding Sequence: ATGAGCAACCGCGGTCTACTCGTGATCACGGGTAAATCTCACAAATCATCCAAAGCATCATTGGAAACCTCTCAAGAGGATGAAATGTTTGCTATAAATAAAGAAGACGTAGTTCCTAAAGCTAGGCAAGGAGAACATTTGGAAAAACATAGGAACAATATAAGGGAAGTTATTCTTTGCTCGAACGCTACGCCGATTAGGTGTCGAGGTGGCATTGGTTATGCGTGTTGTTTTTGTACCAGTCAGTTTCCTGATCCTGCAGACTTAAAGAAACATACGATAAAAGATCATGACGATAAGACGAAAGCAATATTTATGAAAGGGCGGGATATGTACGGATACTTGGTTAAATTAGATATTACAGGATTAGAATGTAATCTATGTGGATTAGGGCTGGAGACTCTAGAGAAAGTTTTGGAGCACTTAAAATATGCTCATAGTAAGAATATCAACACAGAGATACCTAACCATATTTTGccttttaaatttgataatgaGTATTTAAGGTGCTTCATGTGTCAgaatattttcaacaaatttAAAGCTCTCCAAGAACACATGCATACACATTACCGAAATTATATTTGCAAAGTCTGTGACGCTGGATTTGTTAACCGCCATCTTCTATTATGTCACAATGAGGGCCATAAAACTGGTACCTTTGTTTGTGAACAATGCGACCTAGTTTTTGACACTGTTAGAAAGAAAAAATTGCACGAAAGAAAAATCCATAATGGCTTAAACATGCCTCACAAATGTGGATACTGCAGTGAGAGGTTTAGGGAGAATTGTCACAAAAATGAACACTTAGCAAAAGTGCATGGTGTTGTTGGACCAATAATTAAATGTCAAGCTTGTGACAAGACATTTACATTGCAGCAGACTTGGTTACTGCACATGAAAAAGTATCATTTGCTGCAGAAGAAACATGATTGCACGAGATGCGATATGGCCTTTTTTTCTAAGCGGGAGTTAACAGATCACATGGTCAAACACACGGGAACAAGAGAGTTCAAATGTGAAGTTTGCAAGAAATCGTACGGCAGATTAAAGACATTAAAAGAACACGTGAAGAGGCAACACCCAGAAGATTGTTTCTATAAATgtaTACGAACCATTAAAATCGAAAGGCGTTCAACACCTCGAGTCGAGTTGAAGATCATTCGGGGCACCAGGGAGCCTAAACTATCGGATGCCAGGAAAAACCAACAAAATCTTATGACTATTTTGCTTTGTTCCAATGCCAATCCTATTAGATCAAAGGATAGTCTTGGATACGGCTGCGCGTTTTGTCTCGAACAATTTCAGAATCCGACCGAccttaagaaacattttttagtAGAACATAACAACGACAGATTAATTCAGTACATGACGTCCAGATTATTTGAACATGTCGTTAAATTAGATATTACCTACTTAAATTGTTCCCTTTGCAGCGCTAGTGTAGCAAAACTGGAGGATTTGATGCATCACTTAAAGGACGAGCATAAACAAGAAATACACACAGATATAAATAACACTATAGTACCGTTTAAATTTGACACTCCGGAATTAAGATGCGCAATTTGTTCCACGGAATATCTAAACTTCAAACTGTTACAGGAGCATATGAACACTCATTTCGGATATCATTTATGTCCATTGTGTAGCCGAGGCTTTATTACTGAGCGCCTTTTAGCCACTCACATTAGAAGACATGACAACGGTGTATACAAATGTCAAGAGTGCGATAAAGTGTTTGGTAATAATGAGAGGTTAAAGGAACATCAGAGACGGATTCATTTAGGTTTCAACAAACGCAACAAATGTATGATATGTGATGAACGTTTCATGGATTACTGGAGGAAGGTCGATCATATGGTCAAAGTGCACGGAGCACCACCGGTAGTCATAAAGTGCCAAGCTTGCGACCGCACGTTTATCAACCAGAGGGCTCTGGCGCGGCACACTAAAAAAGACCACCTTATGGAAAAAAAGCACCAATGTGAAGAATGTGATATGAGATTCTTTAGCGCTAGCGGATTAAAGCGTCATATGGCGAAGCACACAAGACTGCGCGAGTTCAGATGTGATATTTGCTTCAAATGCTACGGCAGAAAGACTACGTTAAGAGAACATATGCGTATACATGCAGACGACCGCAGGTTTGCCTGTAGTAGATGTGGTCAGGCTTTCGTACAAAAGTGCAGTTGGAAGAGTCACATGAGATCCAAACATGGTGACCAGAAACTAACAATTCCAACAAATGTGGGAAGAAAAGACCGAAAAGGTAAAACCATACGAATTACTGTTGAAAAGAAACTAAACATGGTGATTGTCTCAGAGGTGGAAAAACAtcagaataatataaaagaaattcttTTGAATACGAATGCTACGCCCATTCGTTGTAAGGGAGGCATCGGTTATGCGTGTTGCTTCTGCTCTGAGCAGTTTCCTGATCCAAAAGATTTAAAAGCACACACCCAAGAATCTCACAGTGCTGAAGAAAAATCTACATTTATGAAAGGCAAAGACATGCACGGCTATTTCGTTAAACTTGATATCACAGACGTTAAATGCCAAATTTGCGGCGAAACCTTGGAAAGTGTAGAGAAAGTAGTCAACCATCTGCAAATGAATCACGATAAGAAACTTTATACGGACATTAAGGATCACATACTACCCTTTAAATTTGGCAATGGACCTCTTAACTGTATTATATGTTTGAACGTATTTAACTCTTTCAAAGCTCTCCAAGAACACATGAATGTTCATTATAGTAACTATATATGTCTAGTCTGCGGCGCGGGTTTCGTTAATAAAAACATCCTTCTAAGACATGGAGATGCCCACAAAATAGGAACGTTTACCTGTGAAATCTGTTCCAGAACCTTCGATACGGCGCGAAAAAAGCGATTGCATGATCGATCAAGACACGCCGGGATAAAATTGCCCCATAAATGTGGTTACTGCATGGAAAGATTTAAAGAAGTTTGGAAGAAACAGGAGCATTTGGTTAAGGTTCATGGAATTAAGAGTCCAGGGATCAAGTGTCAAGCGTGTGACAAGAGTTTCGAAAGCAAACATTCTTGGAGGCTGCATATAGCAAGAGTGCATCTCTTGCAAAGACCACACAAGTGTCAGCATTGTGAGATGGAGTTTTATGCTAAGAAGGAGTTGGAGAGCCACATGGTGAAACATACTGGTTCCAGAGAATTTAAATGTGAATCGTGTTCTAAGACTTACGGACGATTGAAGACCTTAAAAGAACATGTCCGAAAAGTACACGTTTGA
Protein Sequence: MSNRGLLVITGKSHKSSKASLETSQEDEMFAINKEDVVPKARQGEHLEKHRNNIREVILCSNATPIRCRGGIGYACCFCTSQFPDPADLKKHTIKDHDDKTKAIFMKGRDMYGYLVKLDITGLECNLCGLGLETLEKVLEHLKYAHSKNINTEIPNHILPFKFDNEYLRCFMCQNIFNKFKALQEHMHTHYRNYICKVCDAGFVNRHLLLCHNEGHKTGTFVCEQCDLVFDTVRKKKLHERKIHNGLNMPHKCGYCSERFRENCHKNEHLAKVHGVVGPIIKCQACDKTFTLQQTWLLHMKKYHLLQKKHDCTRCDMAFFSKRELTDHMVKHTGTREFKCEVCKKSYGRLKTLKEHVKRQHPEDCFYKCIRTIKIERRSTPRVELKIIRGTREPKLSDARKNQQNLMTILLCSNANPIRSKDSLGYGCAFCLEQFQNPTDLKKHFLVEHNNDRLIQYMTSRLFEHVVKLDITYLNCSLCSASVAKLEDLMHHLKDEHKQEIHTDINNTIVPFKFDTPELRCAICSTEYLNFKLLQEHMNTHFGYHLCPLCSRGFITERLLATHIRRHDNGVYKCQECDKVFGNNERLKEHQRRIHLGFNKRNKCMICDERFMDYWRKVDHMVKVHGAPPVVIKCQACDRTFINQRALARHTKKDHLMEKKHQCEECDMRFFSASGLKRHMAKHTRLREFRCDICFKCYGRKTTLREHMRIHADDRRFACSRCGQAFVQKCSWKSHMRSKHGDQKLTIPTNVGRKDRKGKTIRITVEKKLNMVIVSEVEKHQNNIKEILLNTNATPIRCKGGIGYACCFCSEQFPDPKDLKAHTQESHSAEEKSTFMKGKDMHGYFVKLDITDVKCQICGETLESVEKVVNHLQMNHDKKLYTDIKDHILPFKFGNGPLNCIICLNVFNSFKALQEHMNVHYSNYICLVCGAGFVNKNILLRHGDAHKIGTFTCEICSRTFDTARKKRLHDRSRHAGIKLPHKCGYCMERFKEVWKKQEHLVKVHGIKSPGIKCQACDKSFESKHSWRLHIARVHLLQRPHKCQHCEMEFYAKKELESHMVKHTGSREFKCESCSKTYGRLKTLKEHVRKVHV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00782813;
90% Identity: iTF_00782007;
80% Identity: -