Hher014543.1
Basic Information
- Insect
- Heliconius hermathena
- Gene Symbol
- -
- Assembly
- GCA_013403705.1
- Location
- JAAIXJ010000025.1:262644-267514[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0086 87 3.5 0.1 21 48 184 211 176 215 0.91 2 9 0.097 9.8e+02 0.2 0.1 22 44 270 292 265 296 0.81 3 9 0.0016 16 5.8 1.0 21 48 297 324 284 331 0.84 4 9 0.067 6.8e+02 0.7 0.0 21 45 354 378 349 387 0.72 5 9 0.21 2.1e+03 -0.9 0.0 21 44 410 433 405 437 0.75 6 9 5.9e-06 0.06 13.7 0.1 21 52 438 469 417 470 0.83 7 9 0.0039 39 4.6 0.3 23 49 468 495 462 499 0.79 8 9 0.12 1.2e+03 -0.1 0.1 16 45 487 515 484 518 0.77 9 9 0.00053 5.4 7.4 0.0 21 43 519 541 511 545 0.92
Sequence Information
- Coding Sequence
- atgtctgaaatattcaatttaaacaatatatgcCGTTGCTGCCATTCTCAGGGGAACTTCAAACATTTAAATGAATCTTATTTATACAATGGTCAGGAGGAAgtgtattcaaatatattacaacaaacatttaatatagaaATTAAACCAGCTCCCGACTTATCTTATTCAATATGTGAATCATGTATACCAAGACTATGTGATGCATTTCAGTTCAGTCGACAAATTTTATCTTGTGAAAGATTGTTTTATGAATATTGTAGTACACAATTAAAAGatattgattttaattgcaAAGAAATCAAAGATGAAATCCAAGATGACgAGTTCAAAAAAGAAATTCTAAATCAAAACCAAAACAGCTTCGACCAAAAATATGATGATGgtTCATTTAGTGACATAGGAGATGATGATCAACCACTGTCTACGTTAAAAAAAAAAGAGCCGAAAacaaaaacagaaacaaaaataaaaaaatacacatgcGAAGTATGCGAAAAAAAATTCTCATACAATGGCTCCCTAGAAATGCATATGCGTGTACACACAGGCGAAAAACCTCACCCTTGCTACATATGCAACACTAAATACAGTCTAAATAAAGAACTTATAAAACACATTACTATAAAACACAGcataaataactcattcccttgtataaaatgtccaaaaaattttgaaaaagcaCGTTTTTTGAAAAATCATTTAGTCACCCATTTTGGGGTTGAAAAGTTTAAGTGTGTTCATTGTGAAAAGGAGTTTCAAAGGAAGAAAGGGTTGAAAGAGCATTTAAAAGTTCACACTGGGGAACGTAATTTTACTTGTGATATATGCAATAAGTCGTTTGGTCATAATCAGACCCTAAAGAGTCATATTCGCACCCACACTGGTGAAAGACCGTATGTATGCGACATATGCGGCCGTAGATTCCCACAAAGGACACATTTGAAGCGTCACATCTTTATTATACACACCGGCGTTAAACCACACGCGTGCAAAGTATGTAATAAACAGTTTTCGAGCAAAAGTTACTTATCCATCCATGAGAGACAACACACGGGTGAGAAACCCTACAATTGTAGCATATGCAAGAAAGATTTCACTGCATATACTACTCTAAAAGTGCACATGCGTGTACATACAGGCTTAAAACCGTATATATGCTCATTTTGCAACCGTCAATTCGCCCAAATGGCCAGTTTTAAGCTACACGAGCGTACTCACACTGGGGAACGCCCATTTTCTTGTAAAGTATGCAAAAAAGCGTTTTCTGACAATGGTTATTTGAAAATACATATGCGCGTTCACACGGGGGAGAAACCGTTTACTTGTGATATATGCAAACGTTCGTTCAGAGAAACCGGACAGTTGAAACGTCATATGCGTGTACACACGGGGGTGAAACCCTACACATGCAAAATATGCAACAAACAGATAGGGAATCTATCTAAGCATATGCGAGTCCACTCCCAGGATAGGCAGTTTAGTTGTGGCATATGCAACAAGCAGTTTTCCATCAATGGTAATTTGAAGTTGCATATGCGTGTGCACACGGGGGAGAAGCCGTTTGCATGTGATGTATGCGACAGCCATTTTAGTCAGAGCAGTGGTTTGAAAAGGCATAGATGTACTCATGAGAAAATtgaatag
- Protein Sequence
- MSEIFNLNNICRCCHSQGNFKHLNESYLYNGQEEVYSNILQQTFNIEIKPAPDLSYSICESCIPRLCDAFQFSRQILSCERLFYEYCSTQLKDIDFNCKEIKDEIQDDEFKKEILNQNQNSFDQKYDDGSFSDIGDDDQPLSTLKKKEPKTKTETKIKKYTCEVCEKKFSYNGSLEMHMRVHTGEKPHPCYICNTKYSLNKELIKHITIKHSINNSFPCIKCPKNFEKARFLKNHLVTHFGVEKFKCVHCEKEFQRKKGLKEHLKVHTGERNFTCDICNKSFGHNQTLKSHIRTHTGERPYVCDICGRRFPQRTHLKRHIFIIHTGVKPHACKVCNKQFSSKSYLSIHERQHTGEKPYNCSICKKDFTAYTTLKVHMRVHTGLKPYICSFCNRQFAQMASFKLHERTHTGERPFSCKVCKKAFSDNGYLKIHMRVHTGEKPFTCDICKRSFRETGQLKRHMRVHTGVKPYTCKICNKQIGNLSKHMRVHSQDRQFSCGICNKQFSINGNLKLHMRVHTGEKPFACDVCDSHFSQSSGLKRHRCTHEKIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00621389;
- 90% Identity
- iTF_00778167; iTF_00775428; iTF_00776168; iTF_00775728; iTF_00778899; iTF_00782805; iTF_00779191; iTF_00776856; iTF_00780414; iTF_00780704; iTF_00781192; iTF_00781996; iTF_00774641;
- 80% Identity
- iTF_00778167;