Hmel004852.1
Basic Information
- Insect
- Heliconius melpomene
- Gene Symbol
- -
- Assembly
- None
- Location
- Hmel220003o:11171943-11176288[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.12 1.1e+03 -0.1 0.0 15 47 128 161 122 166 0.68 2 10 0.0089 86 3.5 0.1 21 48 163 190 155 194 0.91 3 10 0.099 9.6e+02 0.1 0.1 22 44 249 271 244 274 0.81 4 10 0.0015 15 5.9 1.0 21 48 276 303 263 310 0.84 5 10 0.064 6.2e+02 0.7 0.0 21 45 333 357 328 366 0.72 6 10 0.19 1.8e+03 -0.8 0.0 21 44 389 412 383 416 0.75 7 10 5.6e-06 0.054 13.7 0.1 21 52 417 448 396 449 0.83 8 10 0.0037 35 4.7 0.3 23 49 447 474 441 478 0.79 9 10 0.062 6e+02 0.8 0.1 16 47 466 496 463 501 0.77 10 10 0.00046 4.4 7.6 0.0 21 43 498 520 486 524 0.91
Sequence Information
- Coding Sequence
- ATGTATTCAAATTTATTACAACAAACGTTCAATATAGAAATTAAACCAGCTCCTGACTTATCTTATTCAATATGTGAATCATGTATACCAAGATTACGTGATGCATTTAAGTTCAGTCGACAAGTTTTATCTTGTGAAAGATTGTTTTATGAATATTATAATACACAATTAAAAGATATTGATTTTAATTGCAAAGAAATCAAAGATGAAATCGAAGATTACGACTTCAAAAAAGAAATTATCAATCAAAATCAAGACAACTTTGACCAAAAATATGATGATGGTACATTTAGCGACATAGGAGATGATGACCAGCCATTGTCTACGTTAAAAAGTAATTGCGTTCAAAATGAATGGATTACACCAAGTATAGGAAAAGAACCGAAAACAAGAACAGACACAAAGATAAAAAAATACACATGCGGAATATGCGAAAAAAAATTCTCGTACAACGGCTCCTTAGAAATGCATATGCGTTTACACACGGGCGAAAAACCCCACCCATGCTACATATGCAACACTAAATACAGTCTAAATAAAGAACTTATAAAACACATTACTATAAAACACAGCATAAATAACTCATTTCCTTGTATAAAATGTCCAAAAAATTTTGAAACAGCACGTTTTTTGAAAAATCATTTAATTACCCATTTTGGGGTTGAAAAGTTTAAGTGTGTTCATTGTGAAAAGGAATTTCAAAGGAAGAAAGGGTTGAAAGAACATTTAAAAGTTCACACTGGAGAACGTAATTTCACTTGTGATATATGCAATAAGTCGTTTGGGCATAACCAGACCCTAAAAAGTCATATTCGTACCCACACTGGTGAACGACCGTATGTATGCGATATATGCGGCCGTAGATTCCCACAAAGGACACATTTGAAGCGCCATATCTTTATTATACATACCGGCGTTAAACCCCACGCGTGCAAAGTGTGTAACAAACAATTTTCAAGCAAAAGTTACTTATCCATCCATGAGAGGCAACACACGGGTGAGAAACCCTACAATTGTAGCATATGCAAGAAAGACTTCACTGCATACACTACTCTTAAAGTGCATATGCGTGTACATACAGGCTTAAAACCGTATATATGCTCATTTTGCAACCGTCAATTTGCTCAAATGGCCAGTTTTAAGCTACACGAGCGTACTCACACTGGGGAACGCCCCTTTTCTTGTAAAGTATGCAAAAAAGCGTTTTCTGACAATGGTTACTTGAAAATACACATGCGCGTTCACACGGGGGAGAAACCGTTCACTTGCGACATATGCAAACGTTCGTTCAGGGAAACAGGACAGTTGAAGCGTCACATGCGTGTACACACGGGTGTGAAACCCTACACATGCAAGATATGCAACAAACAGATAGGGAATCTGTCCAAGCATATGCGTGTCCACTCTCAGGACAGGCAGTTTAGTTGTGGCATATGCAATAAGCAGTTTTCCATTAATGGCAATTTGAAGTTGCATATGCGTGTGCACACGGGGGAGAAACCGTTTGCATGTGATGTATGCGACAGCCATTTTAGTCAGAGCAGTGGTTTGAAAAGACATAGATGTACTCATGGGAAAATTGAATAG
- Protein Sequence
- MYSNLLQQTFNIEIKPAPDLSYSICESCIPRLRDAFKFSRQVLSCERLFYEYYNTQLKDIDFNCKEIKDEIEDYDFKKEIINQNQDNFDQKYDDGTFSDIGDDDQPLSTLKSNCVQNEWITPSIGKEPKTRTDTKIKKYTCGICEKKFSYNGSLEMHMRLHTGEKPHPCYICNTKYSLNKELIKHITIKHSINNSFPCIKCPKNFETARFLKNHLITHFGVEKFKCVHCEKEFQRKKGLKEHLKVHTGERNFTCDICNKSFGHNQTLKSHIRTHTGERPYVCDICGRRFPQRTHLKRHIFIIHTGVKPHACKVCNKQFSSKSYLSIHERQHTGEKPYNCSICKKDFTAYTTLKVHMRVHTGLKPYICSFCNRQFAQMASFKLHERTHTGERPFSCKVCKKAFSDNGYLKIHMRVHTGEKPFTCDICKRSFRETGQLKRHMRVHTGVKPYTCKICNKQIGNLSKHMRVHSQDRQFSCGICNKQFSINGNLKLHMRVHTGEKPFACDVCDSHFSQSSGLKRHRCTHGKIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00621389;
- 90% Identity
- iTF_00778464;
- 80% Identity
- iTF_00780414;