Hhew018278.1
Basic Information
- Insect
- Heliconius hewitsoni
- Gene Symbol
- -
- Assembly
- GCA_018230445.1
- Location
- DWAN01024562.1:546-4505[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0033 93 3.9 0.1 21 48 104 131 94 136 0.91 2 9 0.038 1.1e+03 0.5 0.1 22 44 190 212 181 216 0.83 3 9 0.00072 21 6.0 1.1 21 48 217 244 204 251 0.83 4 9 0.028 7.9e+02 0.9 0.0 21 45 274 298 269 307 0.72 5 9 0.083 2.4e+03 -0.6 0.0 21 44 330 353 324 357 0.75 6 9 2.4e-06 0.068 13.9 0.1 21 52 358 389 337 390 0.83 7 9 0.0016 46 4.9 0.3 23 49 388 415 382 419 0.79 8 9 0.043 1.2e+03 0.3 0.1 16 45 407 435 403 438 0.77 9 9 0.0002 5.6 7.8 0.0 21 43 439 461 427 465 0.91
Sequence Information
- Coding Sequence
- attgattttaattacaaagaaaTCAAAGATGAAATCGAAGATGacgAGTTCataaaagaaattcaaaatcaaaacCAAAACAGTTTCGACCAAAAATATGATGATGgtTCATTTAGTGACATAGGAGATGATGATCAACCACTGTCTACGTTAAAAAGTAATTGCGATCAAAATGAATGGATAATACCAAATATAGaaaaagaaccgaaaacaaaaacagaaaccaaaataaaaaaatacacatgcGAAGTATgcgaaaaaaaattctcataCAATGGCTCCCTAGAAATGCATATGCGTGTACACACAGGTGAAAAACCTCACCCTTGCTACATATGCAACACTAAATACAGTCTAAATAAAGAACTTATAAAACACATTACTATAAAACACAGcataaataactcattcccttGTATAAAATGtccaaaaaattttgaaaaagcacgttttttgaaaaatcattTAGTTACCCATTTTGAGGTTGAAAAGTTTAAGTGTGTTCATTGTGAAAAGGAATTTCAAAGGAAGAAAGGGTTGAAAGAGCATTTAAAAGTTCACACAGGGGAACGTAATTTTACTTGTGACATATGCAATAAGTCGTTTGGCCATAATCAGACCCTGAAAAGCCATATTCGTACCCACACTGGTGAACGACCGTATGTATGCGATATATGCGGCCGTAGATTCCCACAAAGGACACATTTGAAGCGCCACATCTTTATTATACACACCGGCGTTAAACCCCACGCGTGCAAAGTGTGTAATAAACAGTTTTCCAGCAAAAGTTATTTATCCATCCATGAGAGACAACACACGGGTGAGAAACCATACAATTGTAGCATATGCAAGAAAGATTTCACTGCATATACTACTCTAAAAGTGCATATGCGTGTACATACAGGCTTAAAACCGTATATATGCTCATTTTGCAACCGTCAATTCGCCCAAATGGCCAGTTTTAAGCTACACGAGCGTACTCACACTGGGGAACGCCCGTTTTCTTGTAAAGTATGCAAAAAAGCATTCTCTGACAATGGTTACTTGAAAATACACATGCGCGTTCACACGGGGGAGAAACCGTTCACTTGCGATATATGCAAACGTTCTTTTAGAGAAACTGGACAGTTGAAACGTCATATGCGTGTACACACGGGGGTGAAACCCTACACATGCAAGATATGCAACAAACAGATAGGGAATCTATCTAAGCATATGCGAGTCCACTCTCAGGACAGGCAGTTTAGTTGTGGCATATGCAACAAGCAATTTTCCATAAATGGCAATTTGAAGTTGCACATGCGTGTGCACACGGGGGAGAAGCCGTTTGCATGTGATGTATGCGACAGCCATTTTAGTCAGAGCAGTGGTTTGAAAAGGCATAGATGTACTCATGAGAAAAttgaatag
- Protein Sequence
- IDFNYKEIKDEIEDDEFIKEIQNQNQNSFDQKYDDGSFSDIGDDDQPLSTLKSNCDQNEWIIPNIEKEPKTKTETKIKKYTCEVCEKKFSYNGSLEMHMRVHTGEKPHPCYICNTKYSLNKELIKHITIKHSINNSFPCIKCPKNFEKARFLKNHLVTHFEVEKFKCVHCEKEFQRKKGLKEHLKVHTGERNFTCDICNKSFGHNQTLKSHIRTHTGERPYVCDICGRRFPQRTHLKRHIFIIHTGVKPHACKVCNKQFSSKSYLSIHERQHTGEKPYNCSICKKDFTAYTTLKVHMRVHTGLKPYICSFCNRQFAQMASFKLHERTHTGERPFSCKVCKKAFSDNGYLKIHMRVHTGEKPFTCDICKRSFRETGQLKRHMRVHTGVKPYTCKICNKQIGNLSKHMRVHSQDRQFSCGICNKQFSINGNLKLHMRVHTGEKPFACDVCDSHFSQSSGLKRHRCTHEKIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00621389;
- 90% Identity
- iTF_00778464;
- 80% Identity
- iTF_00778899;