Hcha017242.1
Basic Information
- Insect
- Heliconius charithonia
- Gene Symbol
- -
- Assembly
- GCA_030704555.1
- Location
- CM060827.1:4147382-4151133[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.011 1.4e+02 3.2 0.1 21 48 197 224 188 228 0.90 2 9 0.099 1.3e+03 0.1 0.1 22 44 283 305 278 309 0.81 3 9 0.0017 22 5.8 1.0 21 48 310 337 297 344 0.84 4 9 0.069 9.1e+02 0.6 0.0 21 45 367 391 362 400 0.72 5 9 0.22 2.9e+03 -1.0 0.0 21 44 423 446 418 450 0.75 6 9 6.1e-06 0.08 13.6 0.1 21 52 451 482 430 483 0.83 7 9 0.004 52 4.6 0.3 23 49 481 508 475 512 0.79 8 9 0.12 1.6e+03 -0.2 0.1 16 45 500 528 497 531 0.77 9 9 0.00054 7.2 7.4 0.0 21 43 532 554 524 558 0.92
Sequence Information
- Coding Sequence
- atggctgaaatattcaatttagaCAATATATGCCGTTGCTGCCATTCTCAGGGGaactttaaacatttaaatgaatcttatttatataatggtcAGGAGGAAgtctattcaaatatattacaacaaacatttaatatagaaattaaacCAGCTCCTGATTTATCTTATTCAATATGTGAATCATGTATACCAAGATTATGTGATGCATTTCAGTTCAGTCGACAAGTTTTATCTTGTGAAAGATTGTTTTATGAATATTGTAGTACACAATTAAAAGatattgattttaattgcAAAGAAATCAAAGATGAAATCAAAGATGAcgagTTCAAAAGAGAAATTCTAAATCAAAACCAAAACAGCTTCGACCAAAAATATGACGATGgtTCATTTAGTGACATAGGAGATGATGATCAACCACTGTCTACGTTAAAAAGTAATTGCGATCAAAATGAATGGATAATACCAAATATAGAAAAAGAACCGAAAACaaaaacagaaacaaaaataaaaaaatacacatgcgAAGTATGCGAAAAAAAATTCTCATACAATGGCTCCCTAGAAATGCATATGCGTGTACACACAGGCGAAAAACCTCACCCTTGCTACATATGCAACACTAAATACAGTCTAAATAAAGaacttataaaacatattactgTAAAACACAGTATAAATAACACATTCCCTTGtataaaatgtccaaaaaattttgaaaaggCACGTTTTTTGAAAAATCATTTAGTCACCCATTTTGGGGCTGAAAAGTTTAAGTGTGTTCATTGTGAAAAAGAGTTTCAAAGGAAGAAAGGGTTGAAAGAGCATTTAAAAGTTCACACTGGGGAACGTAATTTTACTTGTGATATATGCAATAAGTCGTTTGGCCATAATCAGACCTTGAAAAGTCATATTCGTACCCACACTGGTGAACGACCGTATGTATGTGACATATGCGGCCGTAGATTCCCACAAAGGACACATTTGAAGCGTCACATCTTTATTATACACACCGGCGTTAAACCCCACGCATGCAAAGTGTGCAATAAACAGTTTTCAAGTAAAAGTTACTTATCCATCCATGAGAGACAACACACGGGTGAGAAACCCTACAATTGTAGCATATGCAAAAAAGATTTCACTGCATATACTACTCTAAAAGTGCATATGCGTGTACATACAGGCTTAAAACCGTATATTTGCTCATTTTGCAACCGTCAATTCGCTCAAATGGCCAGTTTTAAGCTACACGAGCGTACTCACACTGGGGAACGCCCATTTTCTTGTAAAGTATGCAAAAAAGCATTTTCTGACAATGGTTACTTGAAAATACATATGCGCGTTCACACGGGGGAGAAACCGTTCACTTGTGACATATGCAAACGTTCATTCAGAGAAACTGGACAGTTGAAACGTCATATGCGTGTACACACGGGGGTGAAACCCTATACATGCAAGATATGCAACAAACAGATAGGGAATCTATCTAAGCACATGCGAGTCCACTCTCAGGATAGGCAGTTTAGTTGTGGCATATGCAACAAGCAGTTTTCCATAAATGGCAATTTGAAATTGCACATGCGTGTGCACACTGGGGAGAAGCCGTTTGCATGTGATGTATGCGACAGCCATTTTAGTCAGAGTAGTGGTTTGAAAAGGCatagatgtactcatgagaaaATTggatag
- Protein Sequence
- MAEIFNLDNICRCCHSQGNFKHLNESYLYNGQEEVYSNILQQTFNIEIKPAPDLSYSICESCIPRLCDAFQFSRQVLSCERLFYEYCSTQLKDIDFNCKEIKDEIKDDEFKREILNQNQNSFDQKYDDGSFSDIGDDDQPLSTLKSNCDQNEWIIPNIEKEPKTKTETKIKKYTCEVCEKKFSYNGSLEMHMRVHTGEKPHPCYICNTKYSLNKELIKHITVKHSINNTFPCIKCPKNFEKARFLKNHLVTHFGAEKFKCVHCEKEFQRKKGLKEHLKVHTGERNFTCDICNKSFGHNQTLKSHIRTHTGERPYVCDICGRRFPQRTHLKRHIFIIHTGVKPHACKVCNKQFSSKSYLSIHERQHTGEKPYNCSICKKDFTAYTTLKVHMRVHTGLKPYICSFCNRQFAQMASFKLHERTHTGERPFSCKVCKKAFSDNGYLKIHMRVHTGEKPFTCDICKRSFRETGQLKRHMRVHTGVKPYTCKICNKQIGNLSKHMRVHSQDRQFSCGICNKQFSINGNLKLHMRVHTGEKPFACDVCDSHFSQSSGLKRHRCTHEKIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00621389;
- 90% Identity
- iTF_00778464;
- 80% Identity
- iTF_00775428;