Basic Information

Insect: Halictus rubicundus
Gene Symbol: -
Assembly: GCA_028454235.1
Location: CM052171.1:9974233-9977139[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 6.3e-06 0.00052 20.3 2.5 2 23 445 467 444 467 0.94

2 7 4.5e-06 0.00036 20.8 0.3 1 23 478 500 478 500 0.98

3 7 0.00013 0.011 16.1 2.0 1 23 506 528 506 528 0.93

4 7 0.0023 0.19 12.2 0.1 3 23 537 557 535 557 0.92

5 7 0.00069 0.056 13.9 7.2 1 23 565 587 565 587 0.97

6 7 7.2e-08 5.9e-06 26.4 0.3 1 23 593 615 593 615 0.97

7 7 3.3e-05 0.0027 18.0 0.4 2 23 626 648 625 648 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	6.3e-06	0.00052	20.3	2.5	2	23	445	467	444	467	0.94
2	7	4.5e-06	0.00036	20.8	0.3	1	23	478	500	478	500	0.98
3	7	0.00013	0.011	16.1	2.0	1	23	506	528	506	528	0.93
4	7	0.0023	0.19	12.2	0.1	3	23	537	557	535	557	0.92
5	7	0.00069	0.056	13.9	7.2	1	23	565	587	565	587	0.97
6	7	7.2e-08	5.9e-06	26.4	0.3	1	23	593	615	593	615	0.97
7	7	3.3e-05	0.0027	18.0	0.4	2	23	626	648	625	648	0.95

Sequence Information

Coding Sequence: ATGGAAATGTCCCATGAAATATTGGATACTATAGATACCAGCAATGATAAAAATATGATAAAAGTAAAAGTATTAAAACATGCCATAATGGAGGAAAATATGGTAGTTGAATCTGAGGCTACAGTGGATTCCGCAGACGCGGAAATAGAAGAAATTATAGAAATAATAGAGGAAGTGGAAGAGGAAGAGTCTTTGCAAGATGATTGCTTTGTGGAGACGACAAAAATAAATGATGAAGACAGCGAGAAATGTATAGAAAAAGTGCAAAATGATCAATACGACAGAACTTCAGAAATGGAAGTTTATGCGTATGAAGAAAGTGATAATATAGAGGAAAGCGGGAAAAAGGAAGAGTCACAGAAAAATAATAATAAACAGGTAATAGCGTACGATGTAGACGAAGATTGGCAGGATGAAGATATGGAAGAGGAAGAGGAATATGAACAAAATTCGGATGCTACAAGCCATTGCACAGAATTGCATGAAGAAATAAAATCTGTAAATAATCAAACAATTAATTTTCCTTTACAAACGAATAGATCAGAATCTAGAGATAGTATAGAATCTATAGATAGGACAGAAAAGTCTAAGCTAGCTCAAGATTATAAAAATGTAAATAATGAAGAAAATGTTGATAGTAGCGTAAGTCACGAAATCGTAAAGAATGTCGAAAACAATTTATTGTATACTGTCCTTGGTACAAAGAAGCAAAATTCTGTGCAACCATTGCAGTCTGACAAACTTTCTGATCCTCATTTCATTAAAATGGAGCAACTTGATGAGAATACTATCCCAGTCCAAGGAACAATTTATTATGAAGGAGATAATATAAATACTTTGTACGTAGCTCAGGCTGTGGACGAGAATGAACAGTACACATATGACACTGTACCTGTGGAACAGGATGAACAAGTATGGGAAACAGATAACATAGATACCAGTCAACCTCAAGAAAAAGATGATTCTCAAGAGCAAATATTTTTACACGAAGACGAGGACGGTCAATTATATTTCAAGGATGATGCTGGAGTGTTGCAGCCAGTATATTTAACTGAAGATGGACATTATGCTATTGCAGAAAATAACGATGATCATGAGAATAAAGAAATGCAAGCCAAATCTCAAGAAAATGCCAGACGAGTGGAAGAAGAGGAACCTTATTCTATTCCAGAGGCTGAAATAAAATCTCCTCATAGTAACAAACAGAGTTCCGTGCTTTCTGCAGCTGATCTCGACAATGAGGATAACACGGTGACGATATCCTTGATAATATCCGAAGATGAACACGGTCAAAAACGGACACAAGTTATTATTCCTACAACAGATAATTTGAAGTGCGATATTTGTAACAAAAGTTTCAAAACATCTTTCCAATTACTTCGGCACAATAGATTGAAACACGCACGCGAGGAAGATATTACCACTAGAAACTTTCCGTGCGATCTTTGCCCTAAGAGGTATCCGGATCAAAATTCATTGGCCCGTCATAGGAAGACTCATACGGGTGACCGACCGTTCCTATGTCTCGAGTGTCATAAAAATTTCCCGACGTCGACCGCTTTGCGTCGTCACTTGACGCTCCATAATTCACAGTCACGACCACTGCCGTGCATTTACTGTGGTCGCCGTTTCATAGAGAAAGCTAGTCTGGTTAAACACGAACAGTCACATTTGGCTGCCGATCAGTGGACCCATACATGCGACGTATGTCATAAGACATTCTCGCATGCGACTGATCTGAGTCTCCATAAAAAGTATCATGATCCGGATAAGAAATTTGACTGTGAGGTTTGTGGCCGAGAGTTCAGCCGATTGAACAATTTGCAGAGACATATGATGGTACATCAACAACAAGGAGCTAACGAGGAGATACTCTCGTGCGATGTGTGCGGCATTACGTATAAATTTATGAGTTCGTTAACGAGACACATGGTGACCACGCACATGAACCCAGAAAAATTAAGACAACAGGCAGAAGAGCAACGGAGAAAACGAGAAAATAATTACCGACGTTACCTGGAAAATCGGAAAATGTACGAAACTCAACACTCGGGCGGATATGGTACAAAACGTAGTTACCAACACACACGAATGCTTAGCGAAAGTAATGATGAAGCGGCTTGA
Protein Sequence: MEMSHEILDTIDTSNDKNMIKVKVLKHAIMEENMVVESEATVDSADAEIEEIIEIIEEVEEEESLQDDCFVETTKINDEDSEKCIEKVQNDQYDRTSEMEVYAYEESDNIEESGKKEESQKNNNKQVIAYDVDEDWQDEDMEEEEEYEQNSDATSHCTELHEEIKSVNNQTINFPLQTNRSESRDSIESIDRTEKSKLAQDYKNVNNEENVDSSVSHEIVKNVENNLLYTVLGTKKQNSVQPLQSDKLSDPHFIKMEQLDENTIPVQGTIYYEGDNINTLYVAQAVDENEQYTYDTVPVEQDEQVWETDNIDTSQPQEKDDSQEQIFLHEDEDGQLYFKDDAGVLQPVYLTEDGHYAIAENNDDHENKEMQAKSQENARRVEEEEPYSIPEAEIKSPHSNKQSSVLSAADLDNEDNTVTISLIISEDEHGQKRTQVIIPTTDNLKCDICNKSFKTSFQLLRHNRLKHAREEDITTRNFPCDLCPKRYPDQNSLARHRKTHTGDRPFLCLECHKNFPTSTALRRHLTLHNSQSRPLPCIYCGRRFIEKASLVKHEQSHLAADQWTHTCDVCHKTFSHATDLSLHKKYHDPDKKFDCEVCGREFSRLNNLQRHMMVHQQQGANEEILSCDVCGITYKFMSSLTRHMVTTHMNPEKLRQQAEEQRRKRENNYRRYLENRKMYETQHSGGYGTKRSYQHTRMLSESNDEAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00862764; iTF_00861386; iTF_00866885; iTF_00864822; iTF_00864152; iTF_00866200; iTF_00860604; iTF_00862080; iTF_01071180; iTF_00966190; iTF_00183458; iTF_00184114; iTF_00762745; iTF_00024799;
90% Identity: iTF_00862764;
80% Identity: -