Basic Information

Insect: Lasioglossum leucozonium
Gene Symbol: -
Assembly: GCA_028454225.1
Location: CM052210.1:11657272-11660021[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 7.8e-06 0.00055 20.3 2.5 2 23 457 479 456 479 0.94

2 7 5.5e-06 0.00039 20.7 0.3 1 23 490 512 490 512 0.98

3 7 2e-05 0.0014 19.0 2.3 1 23 518 540 518 540 0.97

4 7 0.0036 0.26 11.9 0.2 3 23 549 569 547 569 0.92

5 7 0.00068 0.048 14.1 7.0 1 23 577 599 577 599 0.97

6 7 8.8e-08 6.3e-06 26.4 0.3 1 23 605 627 605 627 0.97

7 7 4.1e-05 0.0029 18.0 0.4 2 23 638 660 637 660 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	7.8e-06	0.00055	20.3	2.5	2	23	457	479	456	479	0.94
2	7	5.5e-06	0.00039	20.7	0.3	1	23	490	512	490	512	0.98
3	7	2e-05	0.0014	19.0	2.3	1	23	518	540	518	540	0.97
4	7	0.0036	0.26	11.9	0.2	3	23	549	569	547	569	0.92
5	7	0.00068	0.048	14.1	7.0	1	23	577	599	577	599	0.97
6	7	8.8e-08	6.3e-06	26.4	0.3	1	23	605	627	605	627	0.97
7	7	4.1e-05	0.0029	18.0	0.4	2	23	638	660	637	660	0.95

Sequence Information

Coding Sequence: ATGGAAATGTCCCATGAAATATTGGATACTATGGATACTAACAACGATAAAAATATGATGGAAGTATTAAATCATGCCATTTCTGAGGAAAACATGGTAGTTGAATCTGAGGCTACAGAGGATTCCGCAGACACAGAAATAGAAGAAATTATAGAAATAATAGAGGAAGTGGAAGAGGAAGAGTCTTCGCAAGATGGTTCTTTTGTGGAAGAGACGAAAATAAACGATGAAGACAGTGAGAAATGTATAGAGAAACTGCAAAATGATCAATACGATAGAACTTCAGAAATGGAAGTTTATGCGTACGAAGAAAGTGATTCAGTTGAAAAAATAGATAATATAAAGGAAACTGGGAAAGAGGAGCAGTCACAGAAAAATAATAATAAACAGGTAATAACATACGATGTAGACGAAGATTGGCAGGATGAAGATATGGAAGAGGAAGAGGAATATGAACAAAATTCGGATGCTACAAGCCATTGTACAGAATTGTTACAGGAGCAAAGAATTCTGCATGGAGAACAAAAATCTGTAAATAATCAAACAATTCATTTTCCTCTACAAACGAGTAGACCAGAATCTAGAGATAGTATAGAATCTATAGATAGGACAGAAAAGTCCAAGCTAGCTGAAGATTATAAAAATAATGTAAATAATGACGAGAATGTTGATAATAGCGTAAGTCACGAAATTGTAAAGAATGTCGAAAACAATTTATTATATACTGTCCTTGGTACAAAAAAGCAAAATTCTGTAAAAGCATTGCACCCTGACAAACTGTCTGATACTCATTTTATTAAGATGGAGCAACTTGACGAGAATACTATACCGGTCGAAGGAACAATTTATTATGAAGGTGATAATATAGAGACTTTGTATGTAGCTCAGGCTGTGGACGAGAATGAACAGTATGCATACGATGCTGTACCCGTGGAACAGGATGAGCAAGTATGGGAAACAGCTAACATGGATACCAATCAACCTCAAGAAAAAGATGATTCTCAAGAGCAAATATTTTTACACGAAGATGAGGATGGTCAATTATATTTCAAGGATGATGCTGGAGTATTGCAACCAGTATATTTAACTGAAGATGGACATTATGCTATTGCAGAAAATAACGATGATCATGAGAATAAAGAAACGCAAGCCAAATCCCAAGAAAATGCCAGACGAATGGAAGAAGAGGAACCTTATTCTATTCCAGATGCGGAAATAAAATCTCCTCATAGTAACAAACAGAGTTCCGTGCTTTCTGCAACTGATCTGGACAATGAGGATAACACGGTGACGATATCTTTGATAATATCCGAAGATGAACACGGTCAGAAACGGACACAAGTTATTATCCCTACAACAGATAATTTGAAGTGTGACATTTGTAACAAAAGTTTCAAAACATCTTTCCAATTACTTCGACACAATAGATTGAAACACGCACGCGAGGAAGATATTACCACTAGAAACTTTCCATGCGATCTTTGCCCTAAGAGGTATCCGGACCAAAATTCATTGGCCCGTCATAGGAAGACTCATACGGGTGACCGACCGTTTCAATGTCTCGAGTGTCATAAAAATTTCCCGACGTCGACTGCTTTGCGTCGTCACTTAACGCTCCACAATTCACAGTCACGACCACTGGCGTGCATTTACTGTGGTCGCCGTTTCATAGAGAAAGCTAGTCTGGTTAAACACGAACAGTCACATTTGGCTGCCGATCAGTGGACCCACACGTGCGACGTATGTCATAAGTCATTCTCACATGCGACTGATCTGAGTCTCCATAAAAAGTATCATGATCCGGATAAGAAATTTGACTGTGAGGTTTGTGGCCGAGAGTTCAGCCGATTGAACAATTTGCAGAGACATATGATGGTACATCAACAACAAGGAGCTAACGAGGAGATACTCTCGTGCGATGTGTGCGGCATCACGTATAAATTTATGAGTTCATTAACGAGACACATGGTGACTACGCACATGAATCCGGAAAAATTGAGACAACAGGCAGAAGAGCAACGAAGAAAACGAGAAAATAATTACCGACGTTACCTGGAAAATCGGAAAATGTACGAAACTCAACACTCTGGTGGATACGGTACAAAACGTAATTACCAACACACGCGAATGCTTAGCGAAAGTAATGACGAAGCGGCTTGA
Protein Sequence: MEMSHEILDTMDTNNDKNMMEVLNHAISEENMVVESEATEDSADTEIEEIIEIIEEVEEEESSQDGSFVEETKINDEDSEKCIEKLQNDQYDRTSEMEVYAYEESDSVEKIDNIKETGKEEQSQKNNNKQVITYDVDEDWQDEDMEEEEEYEQNSDATSHCTELLQEQRILHGEQKSVNNQTIHFPLQTSRPESRDSIESIDRTEKSKLAEDYKNNVNNDENVDNSVSHEIVKNVENNLLYTVLGTKKQNSVKALHPDKLSDTHFIKMEQLDENTIPVEGTIYYEGDNIETLYVAQAVDENEQYAYDAVPVEQDEQVWETANMDTNQPQEKDDSQEQIFLHEDEDGQLYFKDDAGVLQPVYLTEDGHYAIAENNDDHENKETQAKSQENARRMEEEEPYSIPDAEIKSPHSNKQSSVLSATDLDNEDNTVTISLIISEDEHGQKRTQVIIPTTDNLKCDICNKSFKTSFQLLRHNRLKHAREEDITTRNFPCDLCPKRYPDQNSLARHRKTHTGDRPFQCLECHKNFPTSTALRRHLTLHNSQSRPLACIYCGRRFIEKASLVKHEQSHLAADQWTHTCDVCHKSFSHATDLSLHKKYHDPDKKFDCEVCGREFSRLNNLQRHMMVHQQQGANEEILSCDVCGITYKFMSSLTRHMVTTHMNPEKLRQQAEEQRRKRENNYRRYLENRKMYETQHSGGYGTKRNYQHTRMLSESNDEAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00763409;
90% Identity: iTF_00763409; iTF_00762745; iTF_00866200; iTF_00866885; iTF_00864822; iTF_00864152; iTF_00862080; iTF_00860604; iTF_00861386;
80% Identity: -