Basic Information

Insect: Agapostemon virescens
Gene Symbol: -
Assembly: GCA_028453745.1
Location: CM052098.1:3685636-3687924[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 5.1e-06 0.00071 20.6 2.5 2 23 312 334 311 334 0.94

2 7 3.6e-06 0.0005 21.1 0.3 1 23 345 367 345 367 0.98

3 7 1.3e-05 0.0018 19.4 2.3 1 23 373 395 373 395 0.97

4 7 0.0045 0.62 11.3 1.3 3 23 404 424 402 424 0.92

5 7 0.049 6.8 8.1 7.4 1 23 432 454 432 454 0.95

6 7 5.8e-08 8e-06 26.7 0.3 1 23 460 482 460 482 0.97

7 7 2.7e-05 0.0037 18.4 0.4 2 23 493 515 492 515 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	5.1e-06	0.00071	20.6	2.5	2	23	312	334	311	334	0.94
2	7	3.6e-06	0.0005	21.1	0.3	1	23	345	367	345	367	0.98
3	7	1.3e-05	0.0018	19.4	2.3	1	23	373	395	373	395	0.97
4	7	0.0045	0.62	11.3	1.3	3	23	404	424	402	424	0.92
5	7	0.049	6.8	8.1	7.4	1	23	432	454	432	454	0.95
6	7	5.8e-08	8e-06	26.7	0.3	1	23	460	482	460	482	0.97
7	7	2.7e-05	0.0037	18.4	0.4	2	23	493	515	492	515	0.95

Sequence Information

Coding Sequence: ATGGAAGAGGAACAGGAATACGAACAAAATTCGGATACTACCAATCATTGCACAGAATTGTTACAAGAACAAAGAATTATACAGGAAGAAAAAAAATCTGTAAATAATCAAACAATTAGCTTTCCTTTACAAACAAGTAGATCAGAGTCTAGAGATAGTATAGAATCTGTAGACAGGACAGAAAAGTCCAAGCTAGCTCAGGATTATAAAAATGATGTAAATAATGAAGAGATTGTTGATAATAGTATAAATCACGAAATCGTGAAGAATGTCGAGAACAATTTATTGTATACTGTCCTTGGTACAAAAAAGCAAAATTCTGTAAAAACATTGCAATCGGACAAACTGTCTGATACGCATTATATTAAGATGGAACAACTCGATGAGAATACTATACCAGTCGAAGGAACAATTTATTATGAAGGAGATAATATAGAAACTTTGTATATAGCTCAGGCTGTGGATGAAAATGAACAATATACATATTTTGCTGCTCCTGCGGAACAAGATGAGCAAGTATGGGAAACAACTAACATGGACACCAGTCAACCTCAAGAAAAAGAAGACTCTCAAGAGCAAATATTTTTACACGAAGACGAGGATGGTCAATTATATTTTAAGAATGATTCTGGAGTGTTTCAACCCGTATATTTAACTGAAGACGGACATTACGCTATTGCCGAAAGTAATGATGATCAAGAAAATAAAGAAACGCAAAACAAACCTCAAGAAAATGTCAGGCGAACAGAAGAGGAACCTTATTCTGTTCCAGATACTGAAATCAAATCCCCTCATACTAACCAACAGAGTTCTGTGGTTTCTGCAGCTGATCTTGACAATGAGGATAACACGGTGACGATATCCTTGATAATATCCGAAGATGAACACGGACAAAAACGGACACAAGTTATTATACCAACAACAGATAATTTGAAATGCGATATCTGTAACAAAAGTTTCAAAACATCTTTCCAATTACTTCGGCACAATAGATTGAAACATGCACGCGAGGAACATATTACCACGAGAAACTTTCCGTGCGATCTTTGCCCTAAGAGGTATCCAGATCAAAATTCATTAGCCCGTCATAGGAAGACTCATACGGGTGACCGACCGTTTCAATGTCTTGAATGTCATAAAAACTTCCCGACGTCGACCGCTTTGCGTCGTCACTTGACGCTCCATAATTCACGGTCACGACCATTACCGTGCATTTACTGTGGTCGCCGTTTCATAGAGAAATCTTGTCTGTTTACTCACGAACAGTCACATTTGGCTGCCGATCAGTGGCCCCACAGATGCGACGTATGCCATAAGTCATTCGCGCATGAGACCGATTTGAATTTCCATAAAAAGTATCATGATCCGGATAAGAAATTTGACTGTGAGGTTTGTGGTCGAGAGTTCAGCCGATTGAACAATTTGCAGAGACATATGATGGTACATCAACAACAAGGAGCTAACGAAGAGATACTGTCTTGCGATGTGTGCGGCATCACTTATAAATTTATGAGCTCGTTAACTAGACACATGGTGACCACGCACATGAACCCGGAGAAATTGAGACAACAGGCAGAAGAACAACGGAAAAAACGAGAGAATAATTACCGACGTTACCTGGAAAATCGGAAAATGTATGAAACTCAACACTCGGGTGGATGCGCTACAAAACGTAATTACCAACACACACGAATGTTTAGCGAAAGCAACGATGAAGCAGCTTGA
Protein Sequence: MEEEQEYEQNSDTTNHCTELLQEQRIIQEEKKSVNNQTISFPLQTSRSESRDSIESVDRTEKSKLAQDYKNDVNNEEIVDNSINHEIVKNVENNLLYTVLGTKKQNSVKTLQSDKLSDTHYIKMEQLDENTIPVEGTIYYEGDNIETLYIAQAVDENEQYTYFAAPAEQDEQVWETTNMDTSQPQEKEDSQEQIFLHEDEDGQLYFKNDSGVFQPVYLTEDGHYAIAESNDDQENKETQNKPQENVRRTEEEPYSVPDTEIKSPHTNQQSSVVSAADLDNEDNTVTISLIISEDEHGQKRTQVIIPTTDNLKCDICNKSFKTSFQLLRHNRLKHAREEHITTRNFPCDLCPKRYPDQNSLARHRKTHTGDRPFQCLECHKNFPTSTALRRHLTLHNSRSRPLPCIYCGRRFIEKSCLFTHEQSHLAADQWPHRCDVCHKSFAHETDLNFHKKYHDPDKKFDCEVCGREFSRLNNLQRHMMVHQQQGANEEILSCDVCGITYKFMSSLTRHMVTTHMNPEKLRQQAEEQRKKRENNYRRYLENRKMYETQHSGGCATKRNYQHTRMFSESNDEAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00763409;
90% Identity: -
80% Identity: -