Basic Information

Insect: Augochlorella aurata
Gene Symbol: -
Assembly: GCA_028455555.1
Location: CM052153.1:8600757-8603477[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 7.2e-06 0.00059 20.1 2.6 2 23 432 454 431 454 0.94

2 7 4.3e-06 0.00035 20.8 0.3 1 23 465 487 465 487 0.98

3 7 1.5e-05 0.0012 19.1 2.3 1 23 493 515 493 515 0.97

4 7 0.0022 0.18 12.2 0.1 3 23 524 544 522 544 0.92

5 7 0.00053 0.043 14.2 7.0 1 23 552 574 552 574 0.97

6 7 6.9e-08 5.6e-06 26.4 0.3 1 23 580 602 580 602 0.97

7 7 3.2e-05 0.0026 18.0 0.4 2 23 613 635 612 635 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	7.2e-06	0.00059	20.1	2.6	2	23	432	454	431	454	0.94
2	7	4.3e-06	0.00035	20.8	0.3	1	23	465	487	465	487	0.98
3	7	1.5e-05	0.0012	19.1	2.3	1	23	493	515	493	515	0.97
4	7	0.0022	0.18	12.2	0.1	3	23	524	544	522	544	0.92
5	7	0.00053	0.043	14.2	7.0	1	23	552	574	552	574	0.97
6	7	6.9e-08	5.6e-06	26.4	0.3	1	23	580	602	580	602	0.97
7	7	3.2e-05	0.0026	18.0	0.4	2	23	613	635	612	635	0.95

Sequence Information

Coding Sequence: ATGGAAATGTCCCATGAAATGTTGGATACAATAGATACCAGCAATGATAAGAATATGATAGAAGTATTAAAGCAAGCCATTTCGGAAAAAGATATAATAGTACAATCAGAGGTTACGGAGGATTCTATAGAAACAGAAATAGAAGAAATTATAGAAATAATAGAGGAAGTGGAAGAGGAAGAGTCATTGCAAGATGGTTCTTTTATGGAAGAGAAAAAATCAAATGAAGAAGAAAGTCGAAAAGGTGCAGAAAAACTGCAAAATGACCAATATGGTGATACTTCAGAAATGGAAGTGTATGCTTACGAAGAAAGTGATCCAGTTGGAAAATTGCATAATATAAAAGAAAGTGGAAAAAAAGAACAATCACAGAAATGTAATAATAAACAAGTAATAACATATGATGTAGATGAAGATTGGCAGGATGAAGATATAGAAGAGGAAGAAGAATATGAACAAAATTCGGATTCATTGAGTCATTGCGCAGAACCATTACAAGAACAAAAAAACCCTGCATGGAGAAAGAAAATCTATAGGACAGAAAAGTCCAAATTAGCTCAAGATTACAAAACTAATGTAAATAATGAAGAGAATATTGATACTAGCACAAATCATGAAATCGTAAAAAATGTTGAAAATAATTTATTGTATACTGTCCTTGGTACAAAAAAGCAACCTTCTGTAAAAACATTGCACACAGATAAATTGTCTGATACTCATTATATTAAGATGGAGCAACTTGACGAAAATACTATACCAGTTGAAGGAACAATTTATTATGAAGGAGATAATATAGAAACTTTGTATGTTGCTCAGGCTGTAGATGATAATGAACAGTATGCGTATGATGCTGTGCCTATGGAACAAGATGAGCAAGTATGGGAAACGTCTAACATGGACACCAGTCAACCTCAAGAGAAAGATGATTCTCAAGAGCAAATATTTTTACATGAAGACGAAGATGGTCAATTATATTTCAAGGATGATGCTGGAGTGTTACAACCAGTATATTTAACTGAAGATGGACATTATGCTATTGCAGAATCTAATGATGATCATGAAAATAAAGAAATCCAAACCAAATCTCAAGAAAGTGCCAGTCCAATGGAAGAGGAAACCTATTCTACCCCAGATACTGAACTTAAATCTACTCACAATAACAAACAGAGTTCCGTAATTTCTGCAGCTGATCTTGACAATGAAGATAATACCGTGACGATATCCTTGATAATATCTGAAGATGAACATGGTCAGAAAAGGACACAAGTCATTATACCTACACCAGATAATTTGAAATGTGATATCTGTAACAAAACTTTCAAAACATCTTTCCAATTACTTCGACACAATAGATTAAAACATGCTCGCGAGGAAGATATTACCACAAGAAACTTTCCATGTGATCTTTGCCCTAAGAGGTATCCGGATCAAAATTCATTAGCCCGTCATAGGAAGACTCACACAGGTGACCGACCGTTTCAATGTCTCGAGTGTCATAAAAATTTTCCGACATCGACTGCTTTACGTCGTCACTTGACACTCCATAATTCACAGTCACGACCACTTCCGTGCATTTACTGTGGTCGTCGTTTCATAGAGAAAGCTAGTCTGGTTAAACACGAACAGTCACATTTGGCTGCCGATCAGTGGACCCATACATGCGACGTATGCCATAAGTCATTCTCGCATGCGACTGATCTGAGTCTCCATAAAAAGTATCATGACCCGGATAAGAAATTTGACTGTGAGGTTTGTGGCCGAGAGTTCAGCCGATTGAACAATTTGCAGAGACATATGATGGTACATCAACAACAAGGAGCAAACGAGGAGATACTTTCTTGTGACGTCTGCGGTATCACATATAAATTTATGAGCTCGTTGACGAGACACATGGTGACCACGCACATGAATCCGGAAAAATTGAGACAACAGGCAGAAGAGCAGCGACGAAAACGGGAAAATAATTATCGACGTTACCTGGAAAATCGAAAAATGTATGAAACTCAACACTCGGGTGGATATGGTACGAAACGTAATTACCAACATACGCGAATGCACAGCGAAAGTAACGACGAAGCAGCTTGA
Protein Sequence: MEMSHEMLDTIDTSNDKNMIEVLKQAISEKDIIVQSEVTEDSIETEIEEIIEIIEEVEEEESLQDGSFMEEKKSNEEESRKGAEKLQNDQYGDTSEMEVYAYEESDPVGKLHNIKESGKKEQSQKCNNKQVITYDVDEDWQDEDIEEEEEYEQNSDSLSHCAEPLQEQKNPAWRKKIYRTEKSKLAQDYKTNVNNEENIDTSTNHEIVKNVENNLLYTVLGTKKQPSVKTLHTDKLSDTHYIKMEQLDENTIPVEGTIYYEGDNIETLYVAQAVDDNEQYAYDAVPMEQDEQVWETSNMDTSQPQEKDDSQEQIFLHEDEDGQLYFKDDAGVLQPVYLTEDGHYAIAESNDDHENKEIQTKSQESASPMEEETYSTPDTELKSTHNNKQSSVISAADLDNEDNTVTISLIISEDEHGQKRTQVIIPTPDNLKCDICNKTFKTSFQLLRHNRLKHAREEDITTRNFPCDLCPKRYPDQNSLARHRKTHTGDRPFQCLECHKNFPTSTALRRHLTLHNSQSRPLPCIYCGRRFIEKASLVKHEQSHLAADQWTHTCDVCHKSFSHATDLSLHKKYHDPDKKFDCEVCGREFSRLNNLQRHMMVHQQQGANEEILSCDVCGITYKFMSSLTRHMVTTHMNPEKLRQQAEEQRRKRENNYRRYLENRKMYETQHSGGYGTKRNYQHTRMHSESNDEAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00763409;
90% Identity: iTF_00183458; iTF_00966190;
80% Identity: -