Basic Information

Insect: Megalopta genalis
Gene Symbol: -
Assembly: GCA_011865705.1
Location: NW:1830500-1834464[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 6.4e-06 0.00034 20.0 2.6 2 23 456 478 455 478 0.94

2 7 3.5e-06 0.00019 20.8 1.2 1 23 489 511 489 511 0.98

3 7 1.3e-05 0.00072 19.0 2.3 1 23 517 539 517 539 0.97

4 7 0.0055 0.29 10.8 0.2 3 23 548 568 546 568 0.92

5 7 0.00047 0.025 14.1 7.0 1 23 576 598 576 598 0.97

6 7 6.1e-08 3.2e-06 26.4 0.3 1 23 604 626 604 626 0.97

7 7 2.8e-05 0.0015 18.0 0.4 2 23 637 659 636 659 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	6.4e-06	0.00034	20.0	2.6	2	23	456	478	455	478	0.94
2	7	3.5e-06	0.00019	20.8	1.2	1	23	489	511	489	511	0.98
3	7	1.3e-05	0.00072	19.0	2.3	1	23	517	539	517	539	0.97
4	7	0.0055	0.29	10.8	0.2	3	23	548	568	546	568	0.92
5	7	0.00047	0.025	14.1	7.0	1	23	576	598	576	598	0.97
6	7	6.1e-08	3.2e-06	26.4	0.3	1	23	604	626	604	626	0.97
7	7	2.8e-05	0.0015	18.0	0.4	2	23	637	659	636	659	0.95

Sequence Information

Coding Sequence: ATGGAAATGTCCCATGAAATATTGGATGCAATAGATGCCAGCAATGATAAGAATATGATGGAAGTATTGAAGCAAGCCATTTCGGAAGAAGATATTGTAGTACAATCAGAGGCTACAGAGGATTCTGTAGAAACGGAAATagaagaaattatagaaataatagaggAAGTGGAAGAGGAAGAGTCATCGCAAGATGGTTCTTTTATGGAAgagaaaaaattaaacgaaGAAGAAAGTCAAAAAAGTGCAGAAAAACTGCAAAATGACCAATACGATGATACTTCAGAAATGGAAGTGTATGCATATGAAGAAAGTGATCCAGttgaaaaattgcataatataaaagaaagtgGGAAAAAAGAACAATCAcagaaatgtaataataaacaagTAATAACGTATGATGTAGATGAAGATTGGCAGGATGAAGATatagaagaggaagaagaatatGAACAAAACTCGGATTCATTGAGTCATTGCACAGAATCATTACAAGAACAAAAAACCCTACATGGAGAAAGAAAATCTGTAAATAatcaaacaattaattttcctttacaaacgaGTAGATCGGAATCTAGAGATAGTATGGACTCTATAGATAGGACAGAAAAGTCCAAATTAGCTCAAGATTACAAAACTAATGTAAATAGTGAAGAGACCGTTGATACTAGCACAAATCATGAAATCgtaaagaatgttgaaaataatttattgtatactgtCCTTGGTACAAAAAAACAACCCTCTGTAAAAACATTACACACAGATAAACTGTCTGATACTCATTATATTAAGATGGAGCAACTTGACGAGAATACTATACCAGTTgaaggaacaatttattatgaaGGAGATAATATAGAGACTTTGTATGTTGCTCAGGCTGTGGATGATAATGAACAGTATGCATATGATGCTGTGCCTGTGGAACAAGATGAGCAAGTGTGGGAAACGTCTAACATGGACACCAGTCAACCTCAAGAGAAGGATGATTCtcaagagcaaatatttttacatgaaGACGAGGATGGTCAATTATATTTCAAGGATGATGCTGGAGTGTTGCAACCAGTATATTTAACTGAAGATGGACATTATGCTATTGCAGAAACTAATGATGATCATGAAAACAAAGAAATTCAAGCCAAATCTCAGCAAAGTGCCAGTCCAATGGAAGAGGAAACCTATTCTACCCCAGATACTGAACTTAAATCTACTCACAGTAACAAACAGAGTTCTGTAATTTCTGCAGCTGATCTCGATAATGAGGATAATACGGTGACGATATCCTTAATAATATCTGAAGATGAACATGGTCAGAAAAGGACACAAGTCATTATACCTACACCAGATAATTTGAAATGTGATATCTGTAATAAAACTTTCAAAACATCTTTCCAATTACTTCGGCATAATAGATTAAAACACGCTCGCGAGGAAGATATTACCACAAGAAACTTTCCGTGCGATCTTTGCCCTAAGAgGTATCCGGATCAACATTCATTAGCCCGTCATAGGAAGACTCATACAGGTGACCGACCGTTTCAATGTCTCGAGTGTCATAAAAATTTTCCGACATCGACTGCTCTACGTCGTCATTTGACACTGCATAATTCACAGTCACGACCACTTCCGTGCATTTACTGTGGTCGTCGTTTCATGGAGAAAGCTAGTCTGGTTAAACACGAGCAGTCACATTTGGCCGCCGATCAGTGGACCCATACATGCGACGTATGCCATAAGTCATTCTCGCATGCAACTGATCTGAGTCTCCATAAAAAGTATCATGATCCGGATAAGAAATTTGACTGTGAGGTTTGTGGCCGAGAGTTCAGCCGATTGAACAATTTGCAGAGACATATGATGGTACATCAACAACAAGGAGCAAACGAGGAGATACTCTCTTGTGATGTGTGCGGCATCACATATAAATTTATGAGCTCATTGACGAGACATATGGTGACCACACACATGAATCCAGAAAAATTGAGACAACAAGCAGAAGAGCAGCGACGAAAACGGGAAAATAATTATCGACGTTACctggaaaatcgaaaaatgtatgaaactCAACACTCCGGTGGATATGGTACGAAACGTAATTACCAACATACGCGAATGCACAGTGAAAGTAACGACGAAGCAGCTTGA
Protein Sequence: MEMSHEILDAIDASNDKNMMEVLKQAISEEDIVVQSEATEDSVETEIEEIIEIIEEVEEEESSQDGSFMEEKKLNEEESQKSAEKLQNDQYDDTSEMEVYAYEESDPVEKLHNIKESGKKEQSQKCNNKQVITYDVDEDWQDEDIEEEEEYEQNSDSLSHCTESLQEQKTLHGERKSVNNQTINFPLQTSRSESRDSMDSIDRTEKSKLAQDYKTNVNSEETVDTSTNHEIVKNVENNLLYTVLGTKKQPSVKTLHTDKLSDTHYIKMEQLDENTIPVEGTIYYEGDNIETLYVAQAVDDNEQYAYDAVPVEQDEQVWETSNMDTSQPQEKDDSQEQIFLHEDEDGQLYFKDDAGVLQPVYLTEDGHYAIAETNDDHENKEIQAKSQQSASPMEEETYSTPDTELKSTHSNKQSSVISAADLDNEDNTVTISLIISEDEHGQKRTQVIIPTPDNLKCDICNKTFKTSFQLLRHNRLKHAREEDITTRNFPCDLCPKRYPDQHSLARHRKTHTGDRPFQCLECHKNFPTSTALRRHLTLHNSQSRPLPCIYCGRRFMEKASLVKHEQSHLAADQWTHTCDVCHKSFSHATDLSLHKKYHDPDKKFDCEVCGREFSRLNNLQRHMMVHQQQGANEEILSCDVCGITYKFMSSLTRHMVTTHMNPEKLRQQAEEQRRKRENNYRRYLENRKMYETQHSGGYGTKRNYQHTRMHSESNDEAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00763409;
90% Identity: iTF_00184114;
80% Identity: -