Gvir010670.1
Basic Information
- Insect
- Gymnocheta viridis
- Gene Symbol
- -
- Assembly
- GCA_956483585.1
- Location
- OY101441.1:33554486-33565925[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.052 5.5 8.8 0.1 2 23 202 224 201 224 0.90 2 15 0.8 85 5.1 0.0 6 23 233 250 233 250 0.96 3 15 0.00071 0.076 14.7 0.3 1 23 256 279 256 279 0.96 4 15 0.0014 0.15 13.7 4.8 1 23 289 311 289 311 0.99 5 15 3.9e-05 0.0041 18.6 3.6 2 23 318 340 317 340 0.94 6 15 2.1e-05 0.0022 19.5 1.5 1 23 346 368 346 368 0.95 7 15 0.35 38 6.2 0.5 2 23 377 398 376 398 0.96 8 15 0.00029 0.031 15.9 1.1 2 23 404 426 403 426 0.89 9 15 2.4e-05 0.0025 19.3 0.4 2 23 433 454 432 454 0.96 10 15 0.014 1.5 10.6 1.3 1 16 460 475 460 477 0.91 11 15 3.1e-05 0.0033 18.9 3.5 1 23 496 518 496 518 0.94 12 15 0.042 4.5 9.1 2.9 2 23 527 548 527 548 0.98 13 15 5e-06 0.00053 21.4 1.5 1 22 553 574 553 576 0.89 14 15 7.9e-06 0.00084 20.8 0.4 2 23 583 604 582 604 0.96 15 15 9.4e-06 0.001 20.6 2.4 1 23 610 633 610 633 0.98
Sequence Information
- Coding Sequence
- ATGGTAAAACTAATTGACAAATACCTTGAAATCGAAATTAAACATAACGACATTGTTTCCACTATTATTTGCCAAGATTGTTATGACCACTTAGAAGAGTTTCATCGATTTTCGCAACAAGTAGCCGAAAAACAATTAACACTTCGTAATGAGTTTTTagatgtaaatttaaagaaagaatttaattttgatgGTGATGGTTGGGACAATGATGGACAGGAAGACAAATTTCCAATGAATTCAGAACGGACTACACAAGCAATGACCATTAACTGCccaataaatatgtttaaaaatgaatCGGACAATGATGAAAAGGATGAGCAGGAGATGCCGACGgaagatttatttgaaaatataagtaATGAGAAGGATATCATAGCACCAGACAGTGTGGCCCCAAATGCAGAATCGAACATAAATGATGAACAATCATCAGAAGACGATGACGACGTACCATTAATCAAATTAAGAACTGCGAAGAAGTCAACTCTGAAAAAGAAAGTTAAGAAAGCACCAGCTAAACGCCGGGActgtaaagagaaaaaaacagcaaaaaagaaACTATCTGCAGAAAAGGAAGTGGCGTTGTTGATTGACCTGATATGTGACATTTGCCAAACCCGTGTTGACACATGGAAAGCCTTAAGGGAACATTTTTTGTTAGCACACACCAAAACACCATATATTAAATGCTGTGATATTGTTTATCGTAAACCACGAGCTCTAATGGAACATCTCGAGTGGCATAAAAATCCTGATATGTTCAAttGTCAAatatgtgataaaaatatgtctaGTGCCCGTAATTTAACTATACATATTACATCAGAACATCCCGATGAAGCAGACATAATAGAGTTTTATGAATGTGAGCATTGTTCTAAACGTATTCGGAAttataacttatttaaaaagcatttacgATCGCACAACAAAGACAAGGAAGTTGAATGTCATATATGCAACAAAAGATTTACATCAGAATACCATTTAGATCGTCATATCAGtaattttcataagaaaaaaccTCCTCACGTCTGCGATATATGTGGTcgcacatataaaaataaagctgcattTAAACGTCATTATGATGAGCACCAAGGCGTTGTTTCTCAAGCCGTACAGTGTTCGATTTGCAGCACATGGCTCAAGAATGAAGATTCGTTACGTTTGCATCGTTTTACTCATGAGGAACATCCAACGTCGTGCGATATTTgtggtaaaattttcaaaacaaaacgtaGACTATATAGACACAAAGTATACTGGCACACATTGGACACCAATTTACAATGCAGTTTTTGCGATAAAGTGTTTCGGGAAAAGCGTAATCTTGATGAGCACATGGCCATTCATACTGGCGTTCAACTTTACACATGCCCCCACTGTGGCAAAGATTCACGTTCGAAAtctaatatATGTGCAACTATATATCGTTTGCGTAATCATATTGCATCCGTACACAATAATATATATCATCATATTTGTGatatttgtggaaaaaaattcaaatcaaagaCATCCTTCCAAAAGCATTATGACGAACATCAAGGCATTGTTGAACCTCCAGCTCAATGTACAATCTGTGGTGCATGGCTAAAAAATCAACATAGTCTACGTGTTCACCATCAAACGCACGAAGATACACAATTCGCCTGCGACATTTgtggtaaatttttcaaaactaaaaagaatTTGAGTCGACACAAAGGCTATTGGCACCGACGAGAACGTAATCTTTCGTGCAGCTATTGCGACAAGGTGTTTCGTGAAAAACGTAATCTTGACGAACACATGGCCATGCATACAGATACTAATCTTTACACATGCCCCCACTGCGGCAAAGAATCAAGATCgaaatcaaatatgtatgttcatataaAAAGACAGCATCCCGATGAATGGTGGAAATCAAAACAGGAGCGTTATAAATTGAAACCCGAGGAATTGGAACAAGGAGGAGGCGCAGATGTCATGATTCCACTAGTTGAAACAGCTCCTTCTCATGCACATGAATGTAAAAATGCGGaacaataa
- Protein Sequence
- MVKLIDKYLEIEIKHNDIVSTIICQDCYDHLEEFHRFSQQVAEKQLTLRNEFLDVNLKKEFNFDGDGWDNDGQEDKFPMNSERTTQAMTINCPINMFKNESDNDEKDEQEMPTEDLFENISNEKDIIAPDSVAPNAESNINDEQSSEDDDDVPLIKLRTAKKSTLKKKVKKAPAKRRDCKEKKTAKKKLSAEKEVALLIDLICDICQTRVDTWKALREHFLLAHTKTPYIKCCDIVYRKPRALMEHLEWHKNPDMFNCQICDKNMSSARNLTIHITSEHPDEADIIEFYECEHCSKRIRNYNLFKKHLRSHNKDKEVECHICNKRFTSEYHLDRHISNFHKKKPPHVCDICGRTYKNKAAFKRHYDEHQGVVSQAVQCSICSTWLKNEDSLRLHRFTHEEHPTSCDICGKIFKTKRRLYRHKVYWHTLDTNLQCSFCDKVFREKRNLDEHMAIHTGVQLYTCPHCGKDSRSKSNICATIYRLRNHIASVHNNIYHHICDICGKKFKSKTSFQKHYDEHQGIVEPPAQCTICGAWLKNQHSLRVHHQTHEDTQFACDICGKFFKTKKNLSRHKGYWHRRERNLSCSYCDKVFREKRNLDEHMAMHTDTNLYTCPHCGKESRSKSNMYVHIKRQHPDEWWKSKQERYKLKPEELEQGGGADVMIPLVETAPSHAHECKNAEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00742115; iTF_00742433; iTF_00435800; iTF_00436140;
- 90% Identity
- -
- 80% Identity
- -