Basic Information

Insect: Dexiosoma caninum
Gene Symbol: -
Assembly: GCA_963924685.1
Location: OZ004726.1:11893851-11906438[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.039 2.9e+02 2.4 0.0 27 52 234 259 230 261 0.89

2 12 0.2 1.5e+03 0.1 0.0 30 46 264 280 259 284 0.83

3 12 0.043 3.3e+02 2.2 0.0 26 51 288 313 281 316 0.86

4 12 1.2 8.7e+03 -2.3 0.1 23 48 346 371 336 377 0.70

5 12 0.52 3.9e+03 -1.2 0.1 23 44 374 395 368 401 0.83

6 12 0.24 1.8e+03 -0.2 0.1 23 43 404 424 399 428 0.87

7 12 0.00023 1.7 9.5 0.1 21 44 429 452 425 458 0.89

8 12 0.0041 31 5.5 0.0 26 46 463 483 459 489 0.89

9 12 0.00098 7.4 7.5 0.1 22 44 553 575 546 581 0.90

10 12 0.03 2.3e+02 2.7 0.0 26 44 584 602 577 607 0.86

11 12 0.002 15 6.5 0.0 22 46 609 633 604 638 0.87

12 12 0.34 2.6e+03 -0.6 0.1 26 48 641 663 636 664 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.039	2.9e+02	2.4	0.0	27	52	234	259	230	261	0.89
2	12	0.2	1.5e+03	0.1	0.0	30	46	264	280	259	284	0.83
3	12	0.043	3.3e+02	2.2	0.0	26	51	288	313	281	316	0.86
4	12	1.2	8.7e+03	-2.3	0.1	23	48	346	371	336	377	0.70
5	12	0.52	3.9e+03	-1.2	0.1	23	44	374	395	368	401	0.83
6	12	0.24	1.8e+03	-0.2	0.1	23	43	404	424	399	428	0.87
7	12	0.00023	1.7	9.5	0.1	21	44	429	452	425	458	0.89
8	12	0.0041	31	5.5	0.0	26	46	463	483	459	489	0.89
9	12	0.00098	7.4	7.5	0.1	22	44	553	575	546	581	0.90
10	12	0.03	2.3e+02	2.7	0.0	26	44	584	602	577	607	0.86
11	12	0.002	15	6.5	0.0	22	46	609	633	604	638	0.87
12	12	0.34	2.6e+03	-0.6	0.1	26	48	641	663	636	664	0.84

Sequence Information

Coding Sequence: atgatttgtcGTCtgtgtttaaaagaaattccaaaCGAGTCTTGTATCAAGCTATATGAAAATTTGGAACCATCTGCCGAATCTATAGAAATGGTCAAATTAATTCACAAATACCTTGAAATCGATatTAAACATAACGACATCATATCTACTATTATATGCCAAGATTGTTACGATCATTTGGAAGAGTTTCACAGATTTTCGCAACAAGTAGCCAAGAAACAATTGACACTTGAGAATGAGTTTCTAGATGTAaacttaaagaaagaatttaattttgatgataatgatgactgGAATAATGATGGAACGGAAGAcaaatttccaataaattcaAAACAGACAACACAAAAAGTTAATGTCAACTGTCcaataaatatgtttaaaaatgaatCGGAGAATGATGAAAAGGATGAACAGGAGATGCCAACAGAAGATTTATTTGAGAATGTGATAAGTAATGAAGAGGAGGATATCATAGCGCCCGATAGTGTGGGAGAATCGAACATACATGATCAGTTGTTATCTGATAacgatgatgatgatgtacCGTTAATTAAGTTTAAATCTGCTAAGAAGCCATCacagaataaaaaaatgaagaaaacatCAACTAAAGTACGAGagtttaaagaaaagaaaccaGCTAAAAAGAAATTATCCGCGGAAAAAGAAGTAGCGTTGCTGATGGATCTTAAATGTGACATTTGTCAAACCGGCGTTGATACGTGGAAAGCTCTAAGAGAGCATTTTCTGTTGGCACATACTAAAACGCCATATATTAAGTGCTGTGATATTATTTATCGTAAACCACGAGCTCTAATGGAACATCTTGAGTGGCATAAAAATCCCGATATGTTCAAATGTCAaatttgtgataaaaatatGTCCAGTGCACGTAATTTAACTATACATATTACATCGGAACATCCTGATAAAACAGATGTAATAGAATTTTACGAATGTGAGCATTGTTCGAAGCGTATTAGAAATTATAACTTGTTCAAAAAGCATTTACGATCACACAACAAAGACAAGGAGGTAGAATGCCACATATGCAATAAAAGaTTTCCATCCGAATACCATTTAGATCGTCATATCAGTAGTTTTCATAGGAAAACACCTCACATCTGTGATATTTGTGGTcgaacatataaaaataaaactggatTTAAGCGTCATTATAATGAACATCAAGGTATTGTTTCTCAAGCCGTACAGTGTTCGATTTGCAATAGATGGCTTAAGAATGAAGAATCATTACGAATGCATCGTTTCACTCATGAGGAACATCCAGCATCGTGTGATATTTGTGGTAAAATGTTCAAAACAAAACGTAGATTATATAGACACAAAATATACTGGCATACGTTGGACACCAATTTACAATGTAGTTTTTGCGATAAAGTTTTTCGTGAAAAGCGTAATCTTGATGAACACATGGCCATACATACCGGCGTTCAACTTTATACATGTCCACATTGTGGCAAAGACTCTCGTTCGaaatcaaatatATGTGCAACTATATATCGTTTGCGTAATCATATTGCATCCGTACACAATAATATATATCATCATATTTGTGAtatttgtgggaaaaagttcaaATCAAAGACATCATTCCAAAAGCACTATGACGAACATCAAGGTATTATTGAACCTCCAGCTCAGTGTACAATATGTGGTGCATGGCTAAAAAATCAACATAGTTTACGTGTGCATCACCAAACGCACGAAGATACTCAGTTCGCTTGCGatatttgtggtaaatttttcaaaactaaaaagaaTTTAAGTCGACATAAGGGATACTGGCATCGGCGGGAACGTAATCTTTCTTGCAGCTATTGTGACAAGGTGTTTCGTGAAAAACGTAATCTGGATGAACATATGGCCATGCATACAGATACAAATTTGTATACATGTCCTCATTGCGGCAAAGAGTCAAGGTCTAAATCgaatatgtatgttcatatcaAAAGACAGCATCCCGATGAATGGTGGAAGTCAAAACAAGAACGTTATAAACTAAAACCCGAAGAATTAGAACAGGGAGCCAACGCAGATGTGGAAAAATGTCACAAGTCATCACAATTTGAATCTGATCTTTCTGCTAACCAAGAATGCAAAAATGCGGACtaa
Protein Sequence: MICRLCLKEIPNESCIKLYENLEPSAESIEMVKLIHKYLEIDIKHNDIISTIICQDCYDHLEEFHRFSQQVAKKQLTLENEFLDVNLKKEFNFDDNDDWNNDGTEDKFPINSKQTTQKVNVNCPINMFKNESENDEKDEQEMPTEDLFENVISNEEEDIIAPDSVGESNIHDQLLSDNDDDDVPLIKFKSAKKPSQNKKMKKTSTKVREFKEKKPAKKKLSAEKEVALLMDLKCDICQTGVDTWKALREHFLLAHTKTPYIKCCDIIYRKPRALMEHLEWHKNPDMFKCQICDKNMSSARNLTIHITSEHPDKTDVIEFYECEHCSKRIRNYNLFKKHLRSHNKDKEVECHICNKRFPSEYHLDRHISSFHRKTPHICDICGRTYKNKTGFKRHYNEHQGIVSQAVQCSICNRWLKNEESLRMHRFTHEEHPASCDICGKMFKTKRRLYRHKIYWHTLDTNLQCSFCDKVFREKRNLDEHMAIHTGVQLYTCPHCGKDSRSKSNICATIYRLRNHIASVHNNIYHHICDICGKKFKSKTSFQKHYDEHQGIIEPPAQCTICGAWLKNQHSLRVHHQTHEDTQFACDICGKFFKTKKNLSRHKGYWHRRERNLSCSYCDKVFREKRNLDEHMAMHTDTNLYTCPHCGKESRSKSNMYVHIKRQHPDEWWKSKQERYKLKPEELEQGANADVEKCHKSSQFESDLSANQECKNAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00760313;
90% Identity: iTF_00435800;
80% Identity: iTF_00435800;