Basic Information

Insect: Germaria angustata
Gene Symbol: -
Assembly: GCA_963681545.1
Location: OY813001.1:45853610-45862510[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.006 54 5.3 0.0 26 52 231 257 228 259 0.90

2 13 0.22 2e+03 0.3 0.0 30 46 262 278 255 283 0.84

3 13 0.067 6e+02 1.9 0.0 26 49 286 309 281 314 0.86

4 13 0.85 7.6e+03 -1.6 0.1 22 47 343 368 324 375 0.75

5 13 0.68 6.1e+03 -1.3 0.0 24 44 374 394 366 399 0.84

6 13 0.38 3.4e+03 -0.5 0.0 23 43 403 423 395 427 0.86

7 13 0.00053 4.7 8.7 0.1 21 45 428 452 423 458 0.88

8 13 0.0049 44 5.6 0.0 26 46 462 482 457 487 0.89

9 13 0.48 4.3e+03 -0.8 0.1 24 44 488 508 484 512 0.78

10 13 0.00071 6.4 8.3 0.1 21 44 540 563 523 567 0.84

11 13 0.031 2.8e+02 3.0 0.0 26 45 572 591 563 597 0.85

12 13 0.0025 23 6.5 0.1 22 46 597 621 594 626 0.87

13 13 0.42 3.7e+03 -0.6 0.1 26 48 629 651 624 652 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.006	54	5.3	0.0	26	52	231	257	228	259	0.90
2	13	0.22	2e+03	0.3	0.0	30	46	262	278	255	283	0.84
3	13	0.067	6e+02	1.9	0.0	26	49	286	309	281	314	0.86
4	13	0.85	7.6e+03	-1.6	0.1	22	47	343	368	324	375	0.75
5	13	0.68	6.1e+03	-1.3	0.0	24	44	374	394	366	399	0.84
6	13	0.38	3.4e+03	-0.5	0.0	23	43	403	423	395	427	0.86
7	13	0.00053	4.7	8.7	0.1	21	45	428	452	423	458	0.88
8	13	0.0049	44	5.6	0.0	26	46	462	482	457	487	0.89
9	13	0.48	4.3e+03	-0.8	0.1	24	44	488	508	484	512	0.78
10	13	0.00071	6.4	8.3	0.1	21	44	540	563	523	567	0.84
11	13	0.031	2.8e+02	3.0	0.0	26	45	572	591	563	597	0.85
12	13	0.0025	23	6.5	0.1	22	46	597	621	594	626	0.87
13	13	0.42	3.7e+03	-0.6	0.1	26	48	629	651	624	652	0.84

Sequence Information

Coding Sequence: atgattTGTCGTTTATGTTTAAAAGCAATTCCAAAGGAATCTTGTATTAAGTTATATGAAAATTTGGAACCAACTTCTGAATCTATAGAAATGGTCAAATTAATTGACAAATACCTCGAAATCGAAATTAAACATAACGACATTGTATCTACAATTATTTGCCAAGATTGTTATGATCACTTAGAAGAGTTTCATAGATTTTCACAACAAGTAGCGGAGAAACAATTAACACTTCGTAATGAGTTTTTGGatgtaaacttaaaaaaagaatttaattttgatgataATGGTTGGGGCAATGACGGGCAGGAGGACAAATGTCCTATGGGTTCAGAACAGACAATGGATATTAACTgtccaataaatatatttaaaaacgaatCAGACAATGATGAAAAGGATGAACAAGAAATGTCTGAAGAAGATTTATTTGACAATGCAATGAGTAATGACGAGAAGGATATAATATCACTTGATAGTGTGGTGCCAAATGCAGAATCTAATTTAGATGATCAACTGTCATCTGATAACGATGATAATGTGCCATTGATCAAGCTAAAGACTGCtaagaaaaaaactcaaaaaaagaaAGTCAAGAAAGCACCGATTAAACTCCGCGAGTGTAAAGAAAAGAAAccagttaaaaagaaattatctgCTGAAAAGGAAGTAGCACTATTGATGGACCTAATATGTGACATTTGCCAAGCTCGTGTTGAGACATGGAAAGCTCTAAGGGAACATTTTCTGCTAGCCCATACTAAAACACCTTATATAAAGTGCTGTGATATTATTTATCGTAAACCGCGAGCTCTAATGGAACACCTCGAATGGCATAAGAATCCTGATATGTTTAAatgtcaaatttgtgataaaaatatgTCCAGTGCCCGTAATTTAACCATACATATTACATCAGAACACCCCGATAAAGCAGACATAATAGAATTTTACGAATGCGAACATTGTTCAAAACGTATACGGAattataacttatttaaaaagcatttacGATCACACAACAAAGACAAGGAAGTTGAATGCCATATATGCAATAAAAGatttacaTCAGAATACCATTTAGATCGACATATCAGTAATTTTCATAAGAAAGCACCTCCTCACATCTGTGATATTTGTGGtcgtacatataaaaacaaaactgcaTTTAAACGTCATTATGATGAACATCAAGGTATTGTTTCTCAAGCTGTACAGTGTTCGATTTGCAATAAATGGCTTAAGAATGAAGATTCGTTACGTGTACACCGATTCACTCATGAAGAACATCCAGCGCCGTGCGACATTTGTGGTAAAATGTTCAAAACAAAGCGTAGACTCTATAGACACAAAATGTACTGGCACACTTTGGACACCAATTTACAATGTAGCTTTTGCGATAAAGTGTTTCGTGAAAAGCGTAATTTAGATGAACATATGGCCATACATACCGGCGTCCAACTTTACACATGCCCTCATTGTGGTAAAGACTCACGCTCgaaatcaaatatgtatgtgcatattaaAAGAATACATCCAGATGAATGGTGGAGGTCAAAAATGGAACGTCTGAACTTGAAACCCAAAAGCACGCACTATGACGAACATCAAGGTATTGTTGAACCTCCAGCGCAATGTACAATCTGCGGTGCGTGGTTAAAAAATCAACATAGTCTACGCGTTCACCATCAAACACACGAAGATACCCAATTCGCATGTGATATttgtggtaaattttttaaaactaaaaaaaacttgagTCGCCATAAAGGCTATTGGCATCGGCGGGAGCGTAATCTTTCTTGCAGCTACTGCGACAAAGTGTTTCGTGAAAAACGTAATCTTGATGAACACATGGCTATGCACACAGATACAAATTTATACACTTGCCCTCACTGTGGTAAAGAGTCGAGATCAAAATCgaatatgtatgttcatataaaAAGACAGCATCCTGATGAATGGTGGAAATCAAAACAGGAGCGTTATAAGCTAAAACCCGAGGAAATGGAGCAAGGACGGGGAGAAGATGAGGTAAAATGCAAGTCATTACTAGGTGAAACAGTCTCTCTTACAGAGGAATGTAAAAATTCGgaataa
Protein Sequence: MICRLCLKAIPKESCIKLYENLEPTSESIEMVKLIDKYLEIEIKHNDIVSTIICQDCYDHLEEFHRFSQQVAEKQLTLRNEFLDVNLKKEFNFDDNGWGNDGQEDKCPMGSEQTMDINCPINIFKNESDNDEKDEQEMSEEDLFDNAMSNDEKDIISLDSVVPNAESNLDDQLSSDNDDNVPLIKLKTAKKKTQKKKVKKAPIKLRECKEKKPVKKKLSAEKEVALLMDLICDICQARVETWKALREHFLLAHTKTPYIKCCDIIYRKPRALMEHLEWHKNPDMFKCQICDKNMSSARNLTIHITSEHPDKADIIEFYECEHCSKRIRNYNLFKKHLRSHNKDKEVECHICNKRFTSEYHLDRHISNFHKKAPPHICDICGRTYKNKTAFKRHYDEHQGIVSQAVQCSICNKWLKNEDSLRVHRFTHEEHPAPCDICGKMFKTKRRLYRHKMYWHTLDTNLQCSFCDKVFREKRNLDEHMAIHTGVQLYTCPHCGKDSRSKSNMYVHIKRIHPDEWWRSKMERLNLKPKSTHYDEHQGIVEPPAQCTICGAWLKNQHSLRVHHQTHEDTQFACDICGKFFKTKKNLSRHKGYWHRRERNLSCSYCDKVFREKRNLDEHMAMHTDTNLYTCPHCGKESRSKSNMYVHIKRQHPDEWWKSKQERYKLKPEEMEQGRGEDEVKCKSLLGETVSLTEECKNSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00760313;
90% Identity: iTF_00742115;
80% Identity: iTF_00742115;