Basic Information

Insect: Germaria angustata
Gene Symbol: -
Assembly: GCA_963681545.1
Location: OY813001.1:45853610-45862510[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.15 19 7.2 0.0 2 23 231 253 230 253 0.90

2 14 2.1 2.6e+02 3.6 0.0 6 23 262 279 262 279 0.96

3 14 0.00018 0.022 16.4 0.4 1 23 285 308 285 308 0.97

4 14 0.0013 0.17 13.7 4.8 1 23 318 340 318 340 0.99

5 14 3.7e-05 0.0046 18.6 3.6 2 23 347 369 346 369 0.94

6 14 5.7e-05 0.0072 18.0 2.3 1 23 375 397 375 397 0.94

7 14 0.013 1.6 10.6 0.5 2 23 406 427 405 427 0.97

8 14 5.4e-05 0.0068 18.1 1.1 3 23 434 455 433 455 0.94

9 14 2.2e-05 0.0028 19.3 0.4 2 23 462 483 461 483 0.96

10 14 9.2e-06 0.0012 20.5 1.8 1 23 489 512 489 512 0.98

11 14 0.04 5 9.0 2.9 2 23 545 566 545 566 0.98

12 14 4.7e-06 0.00059 21.4 1.5 1 22 571 592 571 594 0.89

13 14 7.4e-06 0.00094 20.8 0.4 2 23 601 622 600 622 0.96

14 14 8.8e-06 0.0011 20.5 2.4 1 23 628 651 628 651 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.15	19	7.2	0.0	2	23	231	253	230	253	0.90
2	14	2.1	2.6e+02	3.6	0.0	6	23	262	279	262	279	0.96
3	14	0.00018	0.022	16.4	0.4	1	23	285	308	285	308	0.97
4	14	0.0013	0.17	13.7	4.8	1	23	318	340	318	340	0.99
5	14	3.7e-05	0.0046	18.6	3.6	2	23	347	369	346	369	0.94
6	14	5.7e-05	0.0072	18.0	2.3	1	23	375	397	375	397	0.94
7	14	0.013	1.6	10.6	0.5	2	23	406	427	405	427	0.97
8	14	5.4e-05	0.0068	18.1	1.1	3	23	434	455	433	455	0.94
9	14	2.2e-05	0.0028	19.3	0.4	2	23	462	483	461	483	0.96
10	14	9.2e-06	0.0012	20.5	1.8	1	23	489	512	489	512	0.98
11	14	0.04	5	9.0	2.9	2	23	545	566	545	566	0.98
12	14	4.7e-06	0.00059	21.4	1.5	1	22	571	592	571	594	0.89
13	14	7.4e-06	0.00094	20.8	0.4	2	23	601	622	600	622	0.96
14	14	8.8e-06	0.0011	20.5	2.4	1	23	628	651	628	651	0.98

Sequence Information

Coding Sequence: atgattTGTCGTTTATGTTTAAAAGCAATTCCAAAGGAATCTTGTATTAAGTTATATGAAAATTTGGAACCAACTTCTGAATCTATAGAAATGGTCAAATTAATTGACAAATACCTCGAAATCGAAATTAAACATAACGACATTGTATCTACAATTATTTGCCAAGATTGTTATGATCACTTAGAAGAGTTTCATAGATTTTCACAACAAGTAGCGGAGAAACAATTAACACTTCGTAATGAGTTTTTGGatgtaaacttaaaaaaagaatttaattttgatgataATGGTTGGGGCAATGACGGGCAGGAGGACAAATGTCCTATGGGTTCAGAACAGACAATGGATATTAACTgtccaataaatatatttaaaaacgaatCAGACAATGATGAAAAGGATGAACAAGAAATGTCTGAAGAAGATTTATTTGACAATGCAATGAGTAATGACGAGAAGGATATAATATCACTTGATAGTGTGGTGCCAAATGCAGAATCTAATTTAGATGATCAACTGTCATCTGATAACGATGATAATGTGCCATTGATCAAGCTAAAGACTGCtaagaaaaaaactcaaaaaaagaaAGTCAAGAAAGCACCGATTAAACTCCGCGAGTGTAAAGAAAAGAAAccagttaaaaagaaattatctgCTGAAAAGGAAGTAGCACTATTGATGGACCTAATATGTGACATTTGCCAAGCTCGTGTTGAGACATGGAAAGCTCTAAGGGAACATTTTCTGCTAGCCCATACTAAAACACCTTATATAAAGTGCTGTGATATTATTTATCGTAAACCGCGAGCTCTAATGGAACACCTCGAATGGCATAAGAATCCTGATATGTTTAAatgtcaaatttgtgataaaaatatgTCCAGTGCCCGTAATTTAACCATACATATTACATCAGAACACCCCGATAAAGCAGACATAATAGAATTTTACGAATGCGAACATTGTTCAAAACGTATACGGAattataacttatttaaaaagcatttacGATCACACAACAAAGACAAGGAAGTTGAATGCCATATATGCAATAAAAGatttacaTCAGAATACCATTTAGATCGACATATCAGTAATTTTCATAAGAAAGCACCTCCTCACATCTGTGATATTTGTGGtcgtacatataaaaacaaaactgcaTTTAAACGTCATTATGATGAACATCAAGGTATTGTTTCTCAAGCTGTACAGTGTTCGATTTGCAATAAATGGCTTAAGAATGAAGATTCGTTACGTGTACACCGATTCACTCATGAAGAACATCCAGCGCCGTGCGACATTTGTGGTAAAATGTTCAAAACAAAGCGTAGACTCTATAGACACAAAATGTACTGGCACACTTTGGACACCAATTTACAATGTAGCTTTTGCGATAAAGTGTTTCGTGAAAAGCGTAATTTAGATGAACATATGGCCATACATACCGGCGTCCAACTTTACACATGCCCTCATTGTGGTAAAGACTCACGCTCgaaatcaaatatgtatgtgcatattaaAAGAATACATCCAGATGAATGGTGGAGGTCAAAAATGGAACGTCTGAACTTGAAACCCAAAAGCACGCACTATGACGAACATCAAGGTATTGTTGAACCTCCAGCGCAATGTACAATCTGCGGTGCGTGGTTAAAAAATCAACATAGTCTACGCGTTCACCATCAAACACACGAAGATACCCAATTCGCATGTGATATttgtggtaaattttttaaaactaaaaaaaacttgagTCGCCATAAAGGCTATTGGCATCGGCGGGAGCGTAATCTTTCTTGCAGCTACTGCGACAAAGTGTTTCGTGAAAAACGTAATCTTGATGAACACATGGCTATGCACACAGATACAAATTTATACACTTGCCCTCACTGTGGTAAAGAGTCGAGATCAAAATCgaatatgtatgttcatataaaAAGACAGCATCCTGATGAATGGTGGAAATCAAAACAGGAGCGTTATAAGCTAAAACCCGAGGAAATGGAGCAAGGACGGGGAGAAGATGAGGTAAAATGCAAGTCATTACTAGGTGAAACAGTCTCTCTTACAGAGGAATGTAAAAATTCGgaataa
Protein Sequence: MICRLCLKAIPKESCIKLYENLEPTSESIEMVKLIDKYLEIEIKHNDIVSTIICQDCYDHLEEFHRFSQQVAEKQLTLRNEFLDVNLKKEFNFDDNGWGNDGQEDKCPMGSEQTMDINCPINIFKNESDNDEKDEQEMSEEDLFDNAMSNDEKDIISLDSVVPNAESNLDDQLSSDNDDNVPLIKLKTAKKKTQKKKVKKAPIKLRECKEKKPVKKKLSAEKEVALLMDLICDICQARVETWKALREHFLLAHTKTPYIKCCDIIYRKPRALMEHLEWHKNPDMFKCQICDKNMSSARNLTIHITSEHPDKADIIEFYECEHCSKRIRNYNLFKKHLRSHNKDKEVECHICNKRFTSEYHLDRHISNFHKKAPPHICDICGRTYKNKTAFKRHYDEHQGIVSQAVQCSICNKWLKNEDSLRVHRFTHEEHPAPCDICGKMFKTKRRLYRHKMYWHTLDTNLQCSFCDKVFREKRNLDEHMAIHTGVQLYTCPHCGKDSRSKSNMYVHIKRIHPDEWWRSKMERLNLKPKSTHYDEHQGIVEPPAQCTICGAWLKNQHSLRVHHQTHEDTQFACDICGKFFKTKKNLSRHKGYWHRRERNLSCSYCDKVFREKRNLDEHMAMHTDTNLYTCPHCGKESRSKSNMYVHIKRQHPDEWWKSKQERYKLKPEEMEQGRGEDEVKCKSLLGETVSLTEECKNSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00760313;
90% Identity: iTF_00742433;
80% Identity: iTF_00742433;