Fvar002945.1
Basic Information
- Insect
- Frieseomelitta varia
- Gene Symbol
- -
- Assembly
- GCA_011392965.1
- Location
- WNWW01000195.1:142425-147871[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.3e-13 6.4e-10 37.8 0.0 1 39 322 361 322 365 0.90 2 4 1.9e-12 2e-09 36.2 0.1 2 39 377 414 376 417 0.94 3 4 7e-19 7.1e-16 56.9 0.0 2 45 432 476 431 476 0.97 4 4 8e-19 8.1e-16 56.7 0.1 1 42 483 525 483 526 0.97
Sequence Information
- Coding Sequence
- atgttacatttaaataatatgatattaaaaagagataattcaatattaaaaaaaaaaTCACTGTTGAAAACAGCCGATCAACTAAAGATCAAGGGACTTTGCGAGGTGCCCGAAAGTAGAGACGGGCCACCCTCGGTAAGCCTGAGTTCGCCACCAAGGGAACCCGGCACTCCTAGAATAAATTTCACCAAGCTGAAGAGACATCATCAAAGGTACAAAAGGCCTAGAACGACGTTCGAACCTCGCGCTACAGATTCGAGGCATTACGATCGATATAAAGAAGaggaatcgaacgaaaattacgaTTGGGAGAACAAAGAGAATCACATAGACTGGCAACCCGAAGATGAGGAGTGTACGGAGGCAACTGCGGGAGCAGTAGTGCTGGAAACTTGCCAACGCAACAATAACAATAGTACCACTACTGGcaacaccaccaccaccactaccaccaccaccaccaccaccaccaccaccaataacaacaacaataacaacaacaatagcAATAACAACTCCAACGGCAACGGTAACAATACAagcaacaacaataacaacgGTCTCGGTCATTACGGTCATCATCCGGATCCCGGAGAGGTTGATCTACCTCCAGAAACTCAACCAACACCGCCGAGTGCCACATTGGTCGGTACTACAATTACGCATTTAAGGGACCCGGATCATCATTCCACAGAGATTCAGAATTGTGACAGTGTAAAGATAAAGTTTGAAACGTTGCACACAATGGATTCGTCGGACACAATTGATATCGATAGCCACATGTCAGATCGAGCGAGCGTCAGTTCAAAGAACGCAGCCGATAGCGACAACATGATGATGATCACACCGGAATTGCTCGGATTGATGCCATCTGGAAGTTCGATACACTCGGATTCTGGTGAGAATAACTCGAGGGGCCATTCCGGACAATCCAGCTCTCATCATCACGGTTCAAAATCGTGGACCCAAGAGGACATGGACGCTGCCTTGGAAGCCTTACGGAATCACGATATGAGCCTTACAAAAGCCTCTGCAACGTTCGGTATACCCTCGACGACTCTGTGGCAACGAGCGCATCGGCTGGGAATCGATACTCCAAAAAAAGATGGACCTACAAAATCGTGGAGCGACGAGAGTTTAAACAACGCGCTCGAAGCACTACGGACTGGAACAATATCAGCAAACAAAGCTTCGAAAGCATTTGGTATACCGTCGAGTACCTTGTACAAAATCGCGAGAAGGGAAGGCATCAGGCTGGCTGCACCTTTCAATGCAAGTCCCACCACCTGGTCGCCTGCCGATCTCGATCGTGCCCTCGAAGCAATACGCTCCGGCCAAACGTCTGTCCAGAGGGCGTCGACTGAATTCGGTATACCAACAGGAACGTTATACGGTCGATGCAAAAGAGAGGGCATCGAACTTAGCAGGAGTAATCCCACACCTTGGAGCGAAGATGCTATGACCGAAGCTCTCGAAGCTGTCAGATTAGGCCATATGAGCATTAATCAAGCGGCAATCCACTATAATTTACCATACTCCTCCTTGTACGGTCGTTTCAAGAGGGGAAAATACGAAGAACCAGCGGTGGGTGAAATATCGCAAGACGGTAGCAGTCCTCATTTTCATCAAAGCCCGAGTCAAAACCATTCGTCCGCTATACCCGAACAAATGCCGTACCAAGGCAGCTGA
- Protein Sequence
- MLHLNNMILKRDNSILKKKSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFTKLKRHHQRYKRPRTTFEPRATDSRHYDRYKEEESNENYDWENKENHIDWQPEDEECTEATAGAVVLETCQRNNNNSTTTGNTTTTTTTTTTTTTTTNNNNNNNNNSNNNSNGNGNNTSNNNNNGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSIHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGEISQDGSSPHFHQSPSQNHSSAIPEQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00982882; iTF_00117914; iTF_00982204;
- 80% Identity
- -