Mbic016123.2
Basic Information
- Insect
- Melipona bicolor
- Gene Symbol
- -
- Assembly
- GCA_030673865.1
- Location
- JAHYIQ010000021.1:3246113-3249612[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.3e-13 1.6e-09 37.8 0.0 1 39 309 348 309 352 0.90 2 4 2.2e-12 5e-09 36.3 0.1 2 39 364 401 363 404 0.94 3 4 8.2e-19 1.8e-15 56.9 0.0 2 45 419 463 418 463 0.97 4 4 9.3e-19 2.1e-15 56.7 0.1 1 42 470 512 470 513 0.97
Sequence Information
- Coding Sequence
- ATGAAATTCTATCCGCTGAAACGAACCTCACTGTTGAAAACAGCCGATCAACTAAAGATCAAGGGACTTTGCGAGGTGCCCGAAAGTAGAGACGGCCCACCCTCGGTAAGCCTGAGTTCGCCACCAAGGGAACCCGGCACTCCTAGAATAAATTTCACCAAGTTGAAGAGACATCATCAAAGGTACAAAAGGCCTAGAACTACGTTCGAACCTCGCGCTACAGATTCGAGGCATTACGATCGATATAAAGAAGAggaatcgaacgaaaattacGATTGGGAGAACAAAGAGAATCACATAGACTGGCAACCCGAAGATGAGGAGTGTACGGAGGCAACTGCGGGAGCAGTAGTGCTGGAAACTTGCCAACGCAACAGCAACAATAGTACCACCACTGGCAACACCACAACCaccactaccactaccaccaataacaacaacaacagcaataATAACTCCAACGGCAACGGTAACAATacaaacaacaacaataacaacggtGATATGTTTTGTCATACAGGTCTCGGTCATTACGGTCATCATCCGGATCCCGGAGAGGTTGATCTACCTCCAGAAACTCAACCAACACCGCCAAGTGCCACATTGGTTGGTACTACAATTACGCATTTAAGGGACCCGGAACATCATTCCACAGAGATTCAAAATTGTGACAGTGTAAAGATAAAGTTTGAAACGTTGCACACAATGGATTCGTCGGACACGATTGATATCGATAGCCACATGTCAGATCGAGCGAGCGTTAGTTCAAAGAACGCAGCTGATAGCGACAACATGATGATGATCACACCGGAATTGCTTGGTTTGATGCCTTCTGGAAGTTCGATACATTCGGATTCTGGTGAGAATAACTCGAGGGGCCATTCCGGACAATCCAGCTCTCATCATCACGGTTCAAAATCGTGGACTCAAGAGGACATGGATGCTGCCTTAGAAGCCTTACGGAATCACGATATGAGCCTTACAAAAGCCTCTGCAACGTTCGGTATACCCTCGACGACTTTGTGGCAACGAGCGCATCGGCTGGGAATCGATACTCCAAAAAAAGATGGACCTACCAAATCGTGGAGCGACGAGAGTTTAAACAACGCGCTCGAAGCACTACGGACTGGGACAATATCAGCAAACAAAGCTTCAAAAGCATTTGGAATACCGTCGAGTACCTTGTACAAAATCGCGAGAAGGGAAGGCATCAGGCTGGCTGCACCTTTCAATGCAAGTCCCACCACCTGGTCGCCTGCCGATCTCGATCGTGCCCTCGAAGCGATACGTTCCGGCCAAACGTCTGTGCAGAGGGCGTCGACAGAATTCGGTATACCAACAGGAACGTTATACGGTCGATGCAAAAGAGAGGGTATCGAACTTAGCAGGAGTAATCCTACACCTTGGAGCGAAGATGCTATGACTGAAGCTCTCGAAGCTGTTAGATTAGGTCATATGAGCATTAATCAAGCGGCAATCCACTATAATTTACCGTACTCCTCCTTGTACGGCCGTTTCAAGAGGGGAAAGTACGAAGAACCAGCAGTGGGTGAAATATCGCAAGACGGTAGCAGTCCTCATTTTCATCAAAGCCCGAGTCAAAACCATTCGTCCGCTATACCCGATCAAATGCCGTACCAAGGCAGCTGA
- Protein Sequence
- MKFYPLKRTSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFTKLKRHHQRYKRPRTTFEPRATDSRHYDRYKEEESNENYDWENKENHIDWQPEDEECTEATAGAVVLETCQRNSNNSTTTGNTTTTTTTTTNNNNNSNNNSNGNGNNTNNNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPEHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSIHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGEISQDGSSPHFHQSPSQNHSSAIPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00733881;
- 80% Identity
- -