Mbee005438.1
Basic Information
- Insect
- Melipona beecheii
- Gene Symbol
- -
- Assembly
- GCA_032399605.1
- Location
- JAUCMO010000210.1:534637-538122[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.8e-13 1.2e-09 37.8 0.0 1 39 313 352 313 356 0.90 2 4 2.1e-12 3.7e-09 36.3 0.1 2 39 368 405 367 408 0.94 3 4 7.6e-19 1.3e-15 56.9 0.0 2 45 423 467 422 467 0.97 4 4 8.6e-19 1.5e-15 56.7 0.1 1 42 474 516 474 517 0.97
Sequence Information
- Coding Sequence
- ATGAAACTCTATCCGCTGAAACGAACCTCACTGTTGAAAACAGCCGATCAACTAAAAATCAAGGGACTTTGCGAGGTGCCCGAAAGTAGAGACGGCCCACCCTCGGTAAGCCTGAGTTCGCCACCAAGGGAACCCGGCACTCCTAGAATAAATTTCACCAAGTTGAAGAGACATCATCAAAGGTACAAAAGGCCTAGAACTACGTTCGAACCTCGCGCTACAGATTCGAGGCATTACGATCGATATAAAGAAGaggaatcgaacgaaaattacgaTTGGGAGAACAAAGAGAATCACATAGACTGGCAACCTGAAGATGAGGAGTGTACGGAGGCAACTGCGGGAGCAGTAGTGCTGGAAACTTGCCAACGCAACAGCAACAATAGTACCACCACTGGCAACACCACaaccactaccaccaccaccactaccactaccaccaataacaacaacaacaacaatagcAATAATAACGGCAACGGTAACAATACAagcaacaacaataacaacggtGATATGTTTTGTCATACAGGTCTCGGTCATTACGGTCATCATCCGGATCCCGGAGAGGTTGATCTACCTCCAGAAACTCAACCAACACCGCCGAGTGCCACATTGGTTGGTACTACAATTACGCATTTAAGGGACCCGGAACATCATTCCACAGAGATTCAAAATTGTGACAGTGTAAAGATAAAGTTTGAAACGTTGCACACAATGGATTCGTCGGACACGATTGATATCGATAGCCACATGTCAGATCGAGCGAGCGTTAGTTCAAAGAACGCAGCTGATAGCGACAACATGATGATGATCACACCGGAATTGCTTGGTTTGATGCCTTCTGGAAGTTCGATACATTCGGATTCTGGTGAGAATAACTCGAGAGGCCATTCCGGACAATCCAGCTCTCATCATCACGGTTCAAAATCGTGGACTCAAGAGGACATGGATGCTGCCTTAGAAGCCTTACGGAATCACGATATGAGCCTTACAAAAGCCTCTGCAACGTTCGGTATACCCTCGACGACTTTGTGGCAACGAGCGCATCGGCTGGGAATCGATACTCCAAAAAAAGATGGACCTACCAAATCGTGGAGCGACGAAAGTTTAAACAACGCACTCGAAGCACTACGGACTGGGACAATATCAGCAAACAAAGCTTCAAAAGCATTTGGAATACCGTCAAGTACCTTGTACAAAATCGCGAGAAGGGAAGGCATCAGGCTGGCTGCACCTTTCAATGCAAGTCCCACCACCTGGTCGCCTGCCGATCTCGATCGTGCCCTCGAAGCGATACGTTCCGGCCAAACGTCTGTGCAGAGGGCGTCGACAGAATTCGGTATACCAACAGGAACGTTATACGGTCGATGCAAAAGAGAGGGTATTGAACTTAGCAGGAGTAATCCTACACCTTGGAGCGAAGATGCTATGACTGAAGCTCTCGAAGCTGTTAGATTAGGTCATATGAGCATTAATCAAGCGGCAATCCACTATAATTTACCGTACTCCTCCTTGTACGGCCGTTTCAAGAGGGGAAAGTACGAAGAACCAGCGGTGGGTGAAATATCGCAAGACGGTAGCAGTCCTCATTTTCATCAAAGCCCGAGTCAAAACCATTCGTCCGCTATACCCGATCAAATGCCGTACCAAGGCAGCTGA
- Protein Sequence
- MKLYPLKRTSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFTKLKRHHQRYKRPRTTFEPRATDSRHYDRYKEEESNENYDWENKENHIDWQPEDEECTEATAGAVVLETCQRNSNNSTTTGNTTTTTTTTTTTTTNNNNNNNSNNNGNGNNTSNNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPEHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSIHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGEISQDGSSPHFHQSPSQNHSSAIPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00733881;
- 80% Identity
- -