Ebru014174.1
Basic Information
- Insect
- Eurytoma brunniventris
- Gene Symbol
- -
- Assembly
- GCA_900475205.1
- Location
- UXGB01000861.1:36808-42306[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.009 1.1 10.6 1.6 1 23 359 381 359 381 0.95 2 18 0.082 9.7 7.6 1.6 2 23 424 445 423 445 0.94 3 18 0.017 2 9.8 0.1 3 23 510 530 509 530 0.98 4 18 3.9e-05 0.0046 18.0 2.7 2 23 579 600 578 600 0.97 5 18 3.4e-05 0.004 18.2 5.9 1 23 605 627 605 627 0.95 6 18 0.0008 0.094 13.9 0.7 1 21 634 654 634 658 0.92 7 18 0.00091 0.11 13.7 2.8 2 23 743 764 742 764 0.95 8 18 0.0001 0.012 16.7 6.0 1 23 814 836 814 836 0.97 9 18 0.00031 0.036 15.2 0.7 1 20 841 860 841 862 0.94 10 18 0.095 11 7.4 0.2 3 23 874 894 873 894 0.96 11 18 3.2e-05 0.0037 18.3 0.6 2 23 932 953 931 953 0.97 12 18 2.9e-05 0.0034 18.5 1.6 1 23 958 980 958 980 0.95 13 18 8.5e-05 0.0099 17.0 1.5 1 23 986 1008 986 1008 0.98 14 18 5.1e-06 0.0006 20.8 0.4 1 23 1024 1046 1024 1046 0.95 15 18 4.1e-07 4.9e-05 24.3 0.6 1 23 1052 1074 1052 1074 0.99 16 18 4.5e-05 0.0053 17.8 0.2 1 23 1080 1102 1080 1102 0.97 17 18 0.00062 0.073 14.3 6.2 1 23 1108 1130 1108 1130 0.96 18 18 0.012 1.4 10.2 0.4 1 20 1136 1155 1136 1157 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTCGAGGTGGCTACGTCGGGGGAGCCGAGAGCGGGCCTCGGCCACGTCTGCCGGGTCTGCCTCCTCGGCAGCCACTTGGCCCGCGACCTCTACCACGGGGACGGCCTCCTCAACCTCGCCGACAAAGCCATGGCCCTCGCCAGTGTTAAGATGGAACCTGGGGATGGATTGCCGTCTATTATTTGTTGTGAGTGCAGCGACAAACTGGAGGCAGCTTACAAGTTCAAAGTACAAGTGGAGCAAGCAGACAACGTACTGCGAGAGAGACTGGACTCTTTAAACATGAAGGAGGATCTCTTTTTTACTGATGAAGATGTTAATTTATCGCATAGAAGTGACGTAGGGGAAATTACAGAGGAGAGCTTGTTGCTGAAGGACCACATGGATTTGTTGAATGTTCAAAAGATGAGCGATGGAGAGGATGTTTTGCAGAGTGTAGAGAAAGTGGAGTGCGATATTGATATGCAGCAGCATGAAGTAGAAAAGCAGGAGCAGCAAGAAGTTGACCAAGTGTTGAACCAAAGCGAGCAGATTAATATTCAAGAAGATGAACAGTTGCAGGAGATCGACGGCGAGCAACAGTTGGTAATGcaagatgataaaaatttacaggaAATGCATGATGACCAGCACAATCAGTCATTTGGAGCACAAGAACTTCAAGAAATGATGTTCagtgaaattaataatgaggAGGTGATGCAGGAGGAAATTAATCATAGTCATCAATTGGCTATGCACGAGCACAATTATGGTGTAGAATCACAAACTTGCGATATTACCAGTGAAAATGTTACGTTACATCAAGAGgaAATTGAACAAGATAATAGAATGGAACAGGATAGTAAAGAACatatagaaaaacaattaatgaaTGAAGAAAGTGAAATTCACAATGTGCCACAAGAATCTTCTTCAAATCAAGCAACACGcagaagtaaaagaaaaataaatcaacaaaaatcCAATGTTGACAGAGATTCtgatgaagaaaattatttcgaaaatctCAATCTGAGCTCTAGATTGAAGCAAGTTCAGATGGAGAAATCGGAAAAAGTTTACTACCTGTGTTATTTGtgtgaaaaacaatttatatcgAAGGAAGTGTTGAAGGAGCACATGCATTTGCATGAAGAAGTTAGAAAAACTTTGTCCACTACGAAAAAGAGTATTGATAAAGTGTTGAAAACACCAGAAAAACCACAAAGTGCCAGTCCGACTTTGCCCAAACCACCTTCAAGTGGAAAACGTCCAAACAAATGTCCCCATTGTGGAAAGGAGTATTTGTACATTATTTCTTACAATAAACACTTAAAGCAacacgaaaaagaaaagagaaatgtAAAGGTGGAAAAAATGCCCTTGGAAGTATCATTCCAGGAAGACGACGATGCTATGGATTTCCATGATTACGAAAACAATAGTACAGTAGACACAGATATTGAGGACGAAGAGAAGACAGAAGAAACAGAAGAACGAGTTAAGAAAACCGGGAAGAAACTTACTTCTGTTTTATGTAACATTTGTGATGAAGAGTTTGCTGGAGTAGAACAGTTAATGGACCATAGATCAAAACATGTACTGGAAGGCGTACTTACAGAACAAGATTTGAGGCAAGATGAAGAGGAGTTTTCAGCAGaaaccattaaaaacaaagaagacGAACCAAGCAGCCAGGAGGAAGGCGCAGAAGCAAAGCAGGAGGACGAAGCAAAGGAGCTGAAATGTCCTCACTGCCCTATGCGATATGCGCACAAAAAGTCATTGGCGCGTCACATGGAGAGCCACTGCGGCACAAAGTACAGCTGCAAGTTGTGCCATCAGAGCTTCACGCGCAAAGATCACCTTCGCCGCCACGCCGAGCAGCACGGCAACCGGCTCAAGAGCTTCAGGTGCACCCAGTGCAATAAAAGCTTCGGCAATGAGCTCACCCTGCGGAACCACCTCATCGCGACTAATCACAAGACTATCGTCCACGGCCAGGAGTACGATCCCAATAAGAGGATCAAGCGTGTTGCAGCCAAGGCCGCGCAGAAAATCATCGATCAGATTAAAACCGATTTGAATCTAGACGAGGAGGATGAGGACGATGATGATCAGGACAGCGATAGAGATAAAGCCTTTGAATGTGATATTAAGAGTGACCTTACCAGTGCTGAAGAGGAACagTCGGAGGGGTCGAGGAAGCAGCAGCGAAGTAGCGGCAAGTCGCTCTACTGCGAGACCTGCAATCAGAGGTGCACCTCGAAACAAGCGTTAACAAGGCACATGGCGCAGCACGTGAAGGAAGAGAGCACGTCGAAACAACAAGAGAAAATCAAGAAAGAACATCTGGAAAGCCTGGAGAGCGAGGCGAGGGAGGAAGAAGATGAAATGGAGGAGGACGACGACAACTTCGAGGGTGGACTGGGCTGGCTGATGGACAAGCACGAGTGCCCGACCTGCAAAAAGTGCTACAGCACTAAGAAGTCGCTGCTCAGGCATCAGCTGCTCCACGAGGAGCCGAATTTCGAGTGCGACATCTGCAACGTCAAGTTTTATCGCAAAGACAAGCTCAAGGCGCACTACGACAAGTGCTCGGAGAAGAACCCGGATCAGGTGCGGATGTGCAACATTTGCGGTGACAGCTTTGAGAACAATGAAATTCTCAAGGAGCACCGTGCCAAGCACGTCACCGAGGGTATTCTCACGGAGGAGGACCTCAGGGAAATCGAACCCAGGCCCGAGGATAAAAACGGCGAGAAACCTCCCAGGAAGAGACGCACCGATATCGTTGGGCTCGAGTGCACTGAGTGCAATAAGCAGTATACTTCAAGGAAAGGACTGTTGAGACACATTCAggttCACGAGGGCAAAAAGTACCTATGCGATATCTGCCCGAAAAAGTTCTACCGTAGAGAGCACCTAAAAATACACGTAGCCAAGCACAACATGATAAAGCCGTACAAGTGTCCCCGCTGCAGCAAGCGGTTCATCAAGGAGGAGCAGCTGAACAACCACGTGACGAAGCACGACAGACCCTTCAAAAAGGCGAAGGAGACGTCGTCGTCGAAGCGCTTCCTCTGCGAGATCTGCTCGAAGAGCTTCACGCAGTCGACGACGCTGATCGCCCACCTGCGCGCCCACAACGGCATCAAGCCGTACGTGTGCGAGGTGTGCTCGCGGCCCTTCACCACCAACGCCTACCTCAAGATGCACATGCGCACCCACACGCAGGAGCGTCCCTACATCTGCCAGTACTGCTCCCGGGCGTTCGCCCGCGCGGACACCCTGGCCAACCATCTGACCTCGCACACCGGCGAGGCCAAGTACCACTGCAAGTACTGCCCGAAGCACTTCCGCCGGCTCAAGTCGCTCAAAGAGCACGTCTTCATACACACGGGCCAGCGGCCGTACGCCTGTCCCACCTGCGACCGGCGCTTCAACAACAACGGCAGCAGGTACGCGCACAGCAAGCGCTGCAAGCAGAACCTGCTGCAAGGCAGGCCGTCCCAGATCACCGTGCACATGCTCGAGGAGCTGAGGCCCGAGCAGGAGCAGCAGGTCGTCCAGCAGGAGCAGGAGGAGGTGCAGGAGCAGCAGCTGCAGCTGCAAGAGCAGGAGATCCAGCAGAGGATACACCACGCGACCATCGGCCAGGCGCAGATCATCAAGCCGCAGAACATCAAGACCATCACGATCGCCAGGTCCGATCACAATGCCCTCGGCCAGCACGTCATGGCGCACCAGGAGATACTCATGCCGCTCATACTGCCCCTCACCGTCACGCTCACGGACGTCGGCGAGGAGGTCATCTTGCCCGAGGGCACCAAGATTTTTACGGCGTAG
- Protein Sequence
- MDAVEVATSGEPRAGLGHVCRVCLLGSHLARDLYHGDGLLNLADKAMALASVKMEPGDGLPSIICCECSDKLEAAYKFKVQVEQADNVLRERLDSLNMKEDLFFTDEDVNLSHRSDVGEITEESLLLKDHMDLLNVQKMSDGEDVLQSVEKVECDIDMQQHEVEKQEQQEVDQVLNQSEQINIQEDEQLQEIDGEQQLVMQDDKNLQEMHDDQHNQSFGAQELQEMMFSEINNEEVMQEEINHSHQLAMHEHNYGVESQTCDITSENVTLHQEEIEQDNRMEQDSKEHIEKQLMNEESEIHNVPQESSSNQATRRSKRKINQQKSNVDRDSDEENYFENLNLSSRLKQVQMEKSEKVYYLCYLCEKQFISKEVLKEHMHLHEEVRKTLSTTKKSIDKVLKTPEKPQSASPTLPKPPSSGKRPNKCPHCGKEYLYIISYNKHLKQHEKEKRNVKVEKMPLEVSFQEDDDAMDFHDYENNSTVDTDIEDEEKTEETEERVKKTGKKLTSVLCNICDEEFAGVEQLMDHRSKHVLEGVLTEQDLRQDEEEFSAETIKNKEDEPSSQEEGAEAKQEDEAKELKCPHCPMRYAHKKSLARHMESHCGTKYSCKLCHQSFTRKDHLRRHAEQHGNRLKSFRCTQCNKSFGNELTLRNHLIATNHKTIVHGQEYDPNKRIKRVAAKAAQKIIDQIKTDLNLDEEDEDDDDQDSDRDKAFECDIKSDLTSAEEEQSEGSRKQQRSSGKSLYCETCNQRCTSKQALTRHMAQHVKEESTSKQQEKIKKEHLESLESEAREEEDEMEEDDDNFEGGLGWLMDKHECPTCKKCYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRMCNICGDSFENNEILKEHRAKHVTEGILTEEDLREIEPRPEDKNGEKPPRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCPRCSKRFIKEEQLNNHVTKHDRPFKKAKETSSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKHFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLLQGRPSQITVHMLEELRPEQEQQVVQQEQEEVQEQQLQLQEQEIQQRIHHATIGQAQIIKPQNIKTITIARSDHNALGQHVMAHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01381516; iTF_01380773; iTF_00713105; iTF_00714580;
- 90% Identity
- iTF_00713105;
- 80% Identity
- -