Basic Information

Insect: Sycophila texana
Gene Symbol: -
Assembly: GCA_035582955.1
Location: JAWWEN010008034.1:16812-21795[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0057 0.66 11.4 1.8 1 23 360 382 360 382 0.95

2 18 0.12 13 7.3 1.3 2 23 425 446 425 446 0.94

3 18 0.00065 0.075 14.3 0.9 1 23 509 531 509 531 0.98

4 18 4.3e-05 0.005 18.0 2.7 2 23 580 601 579 601 0.97

5 18 3.8e-05 0.0044 18.2 5.9 1 23 606 628 606 628 0.95

6 18 0.00088 0.1 13.9 0.7 1 21 635 655 635 659 0.92

7 18 0.001 0.12 13.7 2.8 2 23 744 765 743 765 0.95

8 18 0.00011 0.013 16.7 6.0 1 23 815 837 815 837 0.97

9 18 0.00034 0.039 15.2 0.7 1 20 842 861 842 863 0.94

10 18 0.1 12 7.4 0.2 3 23 875 895 874 895 0.96

11 18 1.6e-05 0.0018 19.4 0.7 2 23 933 954 932 954 0.97

12 18 3.2e-05 0.0036 18.5 1.6 1 23 959 981 959 981 0.95

13 18 0.00013 0.015 16.5 1.5 1 23 987 1009 987 1009 0.98

14 18 5.6e-06 0.00065 20.8 0.4 1 23 1025 1047 1025 1047 0.95

15 18 4.6e-07 5.3e-05 24.3 0.6 1 23 1053 1075 1053 1075 0.99

16 18 0.00092 0.11 13.9 0.2 1 23 1081 1103 1081 1103 0.97

17 18 0.00068 0.079 14.3 6.2 1 23 1109 1131 1109 1131 0.96

18 18 0.013 1.5 10.2 0.4 1 20 1137 1156 1137 1158 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0057	0.66	11.4	1.8	1	23	360	382	360	382	0.95
2	18	0.12	13	7.3	1.3	2	23	425	446	425	446	0.94
3	18	0.00065	0.075	14.3	0.9	1	23	509	531	509	531	0.98
4	18	4.3e-05	0.005	18.0	2.7	2	23	580	601	579	601	0.97
5	18	3.8e-05	0.0044	18.2	5.9	1	23	606	628	606	628	0.95
6	18	0.00088	0.1	13.9	0.7	1	21	635	655	635	659	0.92
7	18	0.001	0.12	13.7	2.8	2	23	744	765	743	765	0.95
8	18	0.00011	0.013	16.7	6.0	1	23	815	837	815	837	0.97
9	18	0.00034	0.039	15.2	0.7	1	20	842	861	842	863	0.94
10	18	0.1	12	7.4	0.2	3	23	875	895	874	895	0.96
11	18	1.6e-05	0.0018	19.4	0.7	2	23	933	954	932	954	0.97
12	18	3.2e-05	0.0036	18.5	1.6	1	23	959	981	959	981	0.95
13	18	0.00013	0.015	16.5	1.5	1	23	987	1009	987	1009	0.98
14	18	5.6e-06	0.00065	20.8	0.4	1	23	1025	1047	1025	1047	0.95
15	18	4.6e-07	5.3e-05	24.3	0.6	1	23	1053	1075	1053	1075	0.99
16	18	0.00092	0.11	13.9	0.2	1	23	1081	1103	1081	1103	0.97
17	18	0.00068	0.079	14.3	6.2	1	23	1109	1131	1109	1131	0.96
18	18	0.013	1.5	10.2	0.4	1	20	1137	1156	1137	1158	0.89

Sequence Information

Coding Sequence: ATGGACGCCGTCGAGGTGACTACGTCGGGGGAGCCGCGAGCGGGCCTCGGCCACGTCTGCCGGGTGTGCCTCCTCGAAAGCCACTTGGCCTGCGGCCTCTTCCACGGGGACGGCCTCCTCAGCCTCGCCGACAAAGCCATGGCCATCGCCAACGTTAAGATGGAACCTGGAGATGGATTGCCGACTGGTATTTGTTGTGAGTGCAACGACAAACTGGAGGCAGCATATAAGTTTAAGCTGCAAGTAGAGCAAGCGGATACTGTATTAAGAGAGAAATTGGACTCTTTGAATATGAAggaagatatattttttagcgaTGACTTATCGCATAGAAGTGACGTGGGGGAAATCACAGAGGAGAGTTTACTTTTGAAAGATCACATGGATTTGTTGAATGTTCAAAAGATAAGTGAAGGGAATGATGTTTTACAAAGCATTGAGAAGGAAGAGTGTGAGATTGATATGCAGCAGCATCAAGTGGAGAAGGAAGAACAGGAAGAAGATGACCATGCAATGAACGATAACGAGCAGATTCATATTCAAGAAGATCAACAAATGCAGGAGATGGAGTGTGAGCAACAATTGGTAAtggatgataataaaaatttacaggaaATACAAGATGAGGAGCACAATCAGTCTTACGAAGCTCAAGAATTACAGGAAATGAtgttcaatgaaataaataatcaagagGTAATGCAGGAGGAGTTGAATCAAAGTCATCAATTAGCTATGCATGAGCACAATTATGTTGTAGAATCACAAACTTGTGATATTACCAGTGAGAATGATATTGAAAATGATACATTAAATCAAGAGgAGATTAAAGAAGACGGTGAAATGGAAAACaatagtaaagaaaatatagaagAACAATCGATGAATGGAGAAAGTGAAATTCTCAATGTGCCACAAGAATCTTTTTCAAATCAGGTCACTCGCAGAagcaaaaggaaaattaatcaacaaaaatctAATGCTGACCGTGATTCTGATGAAGAaaactattttgaaaatcttaatCTCAGTTCTAGATTAAAACAAGTTCAGATGGAGAAATCGGAAAAAGTTTACTATCTTTgttatttatgtgaaaaacAATTCATATCAAAGGAAGTGTTGAAAGAGCACATGCATTCACATGAGGAAGTTAGAAAAACTTTGTCCActacaaaaaagaatactGAAAAAGTGCTAAAAACACCAGAAAAACCACAAAGTGCCAGTCCTACTTTGTCCAAACCACCATCAAGCGGAAAACGTCCAAACACATGTCCCCATTGTGGAAAGGAGTATTTGTACATTATTTCTTACAATAAGCACTTGAAGCAGcatgaaaaagagaagagcAACGTAAAAGAGGAAAATATGCCTTTGGAAGTATCCTTCCATGAAGACGATGATGCTTTAGATTTTCACGATTATGAAAACAATCCTACTGTAGACTCGGACAGTGAGGatgaagagaaaaaggaagaaatagaagaacaaataaggaaaatatcGAAGAAACTTGCTTCCTTTAAATGCAACATTTGCGATGAAAAGTTCGTTGGTATGGAAAAGCTGAAAGATCATAGATCCAAACATGTTGTGGAAGGCGTACTTACAGAACAAGACTTAAGACAAGAcgaagaacaatttttagCAGAATCCATTAAAATCAAAGAAGACGAGTCAAGCAGCCAGGAGGAAGGCGCAGAAGTAAAGCAGGAGGGCGATACGAAGGAGCTGAAATGTCCTCATTGTCCGATGCGATACGCCCACAAAAAGTCTTTAGCTCGTCACATGGAGAGTCACTGTGGCACAAAGTACAGCTGCAAGCTATGCCATCAGAGCTTTACGCGCAAGGACCACCTTCGTCGCCACGCTGAGCAACACGGTAACCGGCTCAAGAGCTTCAGGTGCACCCAGTGCAATAAGAGCTTCGGCAACGAGCTCACTCTGAGGAATCATCTAATTGCCACTAATCATAAGACTATTGTCCACGGCCAAGAGTACGATCCCAATAAGCGAATTAAGCGCGTTGCAGCAAAAGCTGCGCAGAGAATCATCGATCAGATTAAAACGGATTTAAATCTAGACGAGGAGTATGAGGACGATGAAGAGCAGGACAGTGATAGAGACAAGGGCTATGAATGTGATATTAAGAGTGATAATACTGGCGCTGAAGACGAGCAgTTGGAAAGTTCAAAGAAACATCAGCGAAGCAGCGGCAAGTCGCTCTATTGCGAGACGTGTAATCAGAGGTGTACATCGAAACAGGCGTTAACAAGGCATATGGCGCAACACGTAAAGGATGAGAGCACGTCTAAAcaacaagaaaaattcaagaagGAACAGCAGGAAAGCATGGAGACAGAGGCAAAGGAGGATGAAGATGATATGGAGGAGGATGACGACAACTTCGAGGGTGGACTGGGATGGCTGATGGACAAACACGAGTGTCCGACTTGCAAGAAGTGTTACAGCACTAAAAAGTCGCTGCTCAGGCACCAGTTGCTTCACGAAGAGCCGAATTTCGAGTGCGACATCTGCAACGTCAAGTTTTACCGCAAGGACAAACTCAAGGCACATTACGACAAGTGCTCGGAGAAGAATCCTGATCAGGTGCGGATGTGCAACATCTGTGGTGACAGCTTCGAGAATAACGAAATTCTCAAAGAGCATCGTGCCAAGCACGTCACAGAGGGTATTCTCACCGAGGAGGATCTAAGAGAAATCGAACCCAGGCCCGAAGATAAGAACGGTGAGAAACCCCCTAGAAAGCGACGCACCGACATCGTTGGGCTCGAATGCACTGAATGCAACAAGCGGTATACTTCCAGAAAAGGACTGCTGAGACATATACAGgTTCACGAGGGTAAAAAGTACTTGTGCGACATCTGTCCGAAAAAGTTCTACCGTCGAGAGCACCTAAAAATCCACGTTGCCAAGCACAACATGATCAAGCCCTACAAGTGTCCACGATGCAGTAAGCGTTTTATCAAGGAGGAGCAGCTAAACAGCCACGTGACGAAACACGACAGACCCTTCAAAAAGACGAAGGATACATCGTCGTCGAAGCGTTTCCTCTGCGAGATCTGCTCGAAGAGCTTCACGCAGTCCACGACGCTGATCGCCCACCTGCGCGCCCACAACGGCATCAAACCCTACGTCTGCGAGGTGTGCTCGCGGCCCTTCACCACAAACGCCTACCTCAAGATGCACATGCGCACCCACACGCAGGAGCGGCCGTACATCTGCCAGTACTGTTCTAGCGCGTTCGCCCGCGCGGACACCCTGGCTAATCACCTGACTTCGCACACCGGCGAGGCCAAGTACCACTGCAAGTATTGTCCAAAACACTTCCGCCGGCTCAAGTCGCTCAAGGAGCACGTCTTCATTCACACGGGCCAGCGGCCCTACGCCTGTCCTACCTGCGACCGACGATTCAACAACAACGGCAGCAGGTACGCGCACAGCAAGCGCTGCAAGCAGAACCTGCTGCAGGGCAGGCAGCCCCAGCTCGCCGTGCAGATGCTTGAGGAACTGAGGACGGAGCAGAGCCAGCCGCAGGAGCAGGAGGAGGTGCAGGAACAGCAGCTGCAGTTGCACGAGCAGGAGATCCAGCAGAGGATACACCATGCGACCATCGGCCAGGCGCAGATCATCAAGCCGCAGAATATCAAGACCATTACGATCGCCAGGTCCGATCACAATGCTCTCGGGCAACACGTCATGGCGCATCAGGAGATTCTTATGCCCCTCATACTACCGCTCACCGTCACGCTTACGGATGTCGGTGAAGAGGTCATCTTGCCAGAGGGTACCAAGATTTTTACGGCGTAG
Protein Sequence: MDAVEVTTSGEPRAGLGHVCRVCLLESHLACGLFHGDGLLSLADKAMAIANVKMEPGDGLPTGICCECNDKLEAAYKFKLQVEQADTVLREKLDSLNMKEDIFFSDDLSHRSDVGEITEESLLLKDHMDLLNVQKISEGNDVLQSIEKEECEIDMQQHQVEKEEQEEDDHAMNDNEQIHIQEDQQMQEMECEQQLVMDDNKNLQEIQDEEHNQSYEAQELQEMMFNEINNQEVMQEELNQSHQLAMHEHNYVVESQTCDITSENDIENDTLNQEEIKEDGEMENNSKENIEEQSMNGESEILNVPQESFSNQVTRRSKRKINQQKSNADRDSDEENYFENLNLSSRLKQVQMEKSEKVYYLCYLCEKQFISKEVLKEHMHSHEEVRKTLSTTKKNTEKVLKTPEKPQSASPTLSKPPSSGKRPNTCPHCGKEYLYIISYNKHLKQHEKEKSNVKEENMPLEVSFHEDDDALDFHDYENNPTVDSDSEDEEKKEEIEEQIRKISKKLASFKCNICDEKFVGMEKLKDHRSKHVVEGVLTEQDLRQDEEQFLAESIKIKEDESSSQEEGAEVKQEGDTKELKCPHCPMRYAHKKSLARHMESHCGTKYSCKLCHQSFTRKDHLRRHAEQHGNRLKSFRCTQCNKSFGNELTLRNHLIATNHKTIVHGQEYDPNKRIKRVAAKAAQRIIDQIKTDLNLDEEYEDDEEQDSDRDKGYECDIKSDNTGAEDEQLESSKKHQRSSGKSLYCETCNQRCTSKQALTRHMAQHVKDESTSKQQEKFKKEQQESMETEAKEDEDDMEEDDDNFEGGLGWLMDKHECPTCKKCYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRMCNICGDSFENNEILKEHRAKHVTEGILTEEDLREIEPRPEDKNGEKPPRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCPRCSKRFIKEEQLNSHVTKHDRPFKKTKDTSSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSSAFARADTLANHLTSHTGEAKYHCKYCPKHFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLLQGRQPQLAVQMLEELRTEQSQPQEQEEVQEQQLQLHEQEIQQRIHHATIGQAQIIKPQNIKTITIARSDHNALGQHVMAHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00713817;
90% Identity: iTF_01380773;
80% Identity: -