Sque008904.1
Basic Information
- Insect
- Sycophila quercilanae
- Gene Symbol
- -
- Assembly
- GCA_035582995.1
- Location
- JAWWEP010001674.1:21934-26312[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0052 0.59 11.4 1.8 1 23 307 329 307 329 0.95 2 18 0.11 12 7.3 1.3 2 23 372 393 372 393 0.94 3 18 0.0006 0.068 14.4 0.9 1 23 456 478 456 478 0.98 4 18 4e-05 0.0045 18.1 2.7 2 23 527 548 526 548 0.97 5 18 3.5e-05 0.0039 18.3 5.9 1 23 553 575 553 575 0.95 6 18 0.00081 0.092 14.0 0.7 1 21 582 602 582 606 0.92 7 18 0.00092 0.1 13.8 2.8 2 23 691 712 690 712 0.95 8 18 0.0001 0.012 16.8 6.0 1 23 762 784 762 784 0.97 9 18 0.00031 0.036 15.3 0.7 1 20 789 808 789 810 0.94 10 18 0.096 11 7.4 0.2 3 23 822 842 821 842 0.96 11 18 1.4e-05 0.0016 19.5 0.7 2 23 880 901 879 901 0.97 12 18 2.9e-05 0.0033 18.5 1.6 1 23 906 928 906 928 0.95 13 18 0.00012 0.014 16.6 1.5 1 23 934 956 934 956 0.98 14 18 5.1e-06 0.00058 20.9 0.4 1 23 972 994 972 994 0.95 15 18 4.2e-07 4.7e-05 24.3 0.6 1 23 1000 1022 1000 1022 0.99 16 18 0.00085 0.096 13.9 0.2 1 23 1028 1050 1028 1050 0.97 17 18 0.00063 0.071 14.3 6.2 1 23 1056 1078 1056 1078 0.96 18 18 0.012 1.3 10.3 0.4 1 20 1084 1103 1084 1105 0.89
Sequence Information
- Coding Sequence
- ATGGAACCTGGAGATGGATTGCCGACTGGTATTTGTTGTGAGTGCAACGACAAACTGGAGGCAGCATATAAGTTTAAGCTGCAAGTGGAGCAAGCGGATACTGTATTAAGAGAGAAATTGGACTCTTTGAATATGAAggaagatatattttttagcgaTGACTTATCGCATAGAAGTGACGTGGGGGAAATCACAGAGGAGAGTTTACTTTTGAAAGATCACATGGATTTGTTGAATGTTCAAAAGATAAGTGAAGGAAATGATGTTTTACAAAGCATTGAGAAGGAAGAGTGTGAGATTGATATGCAGCAGCATCAAGTGGAGAAGGAAGAACAGGAAGAAGATGACCATGCAATGAACGATAACGAGCAGATTCATATTCAAGAAGATCAACAAATGCAGGAGATGGAGTGTGAGCAACAATTGGTAAtggatgataataaaaatttacaggaaATACAAGATGAGGAGCACAATCAGTCTTACGAAGCTCAAGAATTACAGGAAATGAtgttcaatgaaataaataatcaagagGTAATGCAGGAGGAGTTAAATCAAAGTCATCAATTAGCTATGCATGAGCACAATTATGTTGTAGAATCACAAACTTGTGATATTACCAATGAGAATGATATTGAAAATGATACATTAAATCAAGAGgAGATTAAAGAAGACGGTGAAAtggaaaacaatattaaagaaaatatagaagAACAATCGATGAATGGAGAAAGTGAAATTCTCAATGTGCCACAAGAATCTTTTTCAAATCAGGTCACTCGTAGAagcaaaaggaaaattaatcaacaaaaatctAATGCTGACCGTGATTCTGATGAAGAaaactattttgaaaatcttaatCTCAGTTCTAGATTAAAACAAGTTCAGATGGAGAAATCGGAAAAAGTTTACTATCTTTgttatttatgtgaaaaacAATTCATATCAAAGGAAGTGCTGAAAGAGCACATGCATTCACATGAGGAAGTTAGAAAAACTTTGTCCACTACAAAAAAGAATACTGAAAAAGTGCTAAAAACACCAGAAAAACCACAAAGTGCCAGTCCTACTTTGTCCAAACCACCATCAAGCGGAAAACGTCCAAACACATGTCCCCATTGCGGAAAGGAGTATTTGTACATTATTTCTTACAATAAGCACTTGAAGCAGcatgaaaaagagaagagcAATGTAAAAGAGGAAAATATGCCTTTGGAAGTATCCTTCCATGAAGACGATGATGCTTTAGATTTTCACGATTATGAAAACAATCCTACTGTAGACTCGGACAGTGAGGatgaagagaaaaaggaagaaattgaagaacaaataaggaaaatatcGAAGAAATTTGCTTCCTTTAAATGCAACATTTGCGATGAAAAGTTCGTTGGTATGGAAAAGCTGAAAGATCATAGATCGAAACATGTTGTGGAAGGCGTACTTACAGAACAAGACTTAAGACAAGACGAAGAACAGTTTTTAGCAGAATCCATTAAAATCAAAGAAGACGAGTCAAGCAGCCAGGAGGAAGGCGCAGAAGTAAAGCAGGAGGGCGATACGAAGGAGCTGAAATGTCCTCATTGTCCGATGCGATACGCCCACAAAAAGTCTTTAGCTCGTCACATGGAGAGTCACTGTGGCACAAAGTACAGCTGCAAGCTATGCCATCAGAGCTTTACGCGCAAGGACCACCTTCGTCGCCACGCCGAGCAACACGGTAACAGGCTCAAGAGCTTCAGGTGCACCCAGTGCAATAAGAGCTTCGGCAACGAGCTCACTCTGAGGAATCATCTAATTGCCACTAATCATAAGACTATTGTCCACGGCCAAGAGTACGATCCCAATAAGCGGATTAAGCGCGTTGCAGCAAAAGCTGCGCAGAGAATCATCGATCAGATTAAAACGGATTTAAATCTAGACGAGGAGTATGAGGACGATGAAGAGCAGGACAGTGATAGAGACAAGGGCTATGAATGTGATATTAAGAGTGATAATACTGGCGCTGAAGACGAGCAgTTGGAAAGTTCAAAGAAACATCAGCGAAGCAGCGGCAAGTCGCTCTATTGCGAGACGTGTAATCAGAGGTGTACATCGAAACAGGCGTTAACAAGGCATATGGCGCAACACGTAAAGGATGAGAGCACGTCTAAACaacaagaaaaattcaagaagGAACAGCAGGAAAGCATGGAGACAGAGGCAAAGGAGGATGAAGATGATATGGAGGAGGATGACGACAACTTCGAGGGTGGACTGGGATGGCTGATGGACAAACACGAGTGCCCGACTTGCAAGAAGTGCTACAGCACTAAAAAGTCGCTGCTCAGGCACCAGTTGCTACACGAAGAGCCGAATTTCGAGTGCGACATCTGCAACGTCAAGTTTTACCGCAAGGACAAACTCAAGGCACATTACGACAAGTGCTCGGAGAAGAATCCTGATCAGGTGCGGATGTGCAACATCTGTGGTGACAGCTTCGAGAATAACGAAATTCTCAAAGAGCATCGTGCCAAGCACGTCACAGAGGGTATTCTCACCGAGGAGGACCTCAGAGAAATCGAACCCAGGCCCGAAGATAAGAACGGTGAGAAACCCCCTAGAAAGCGACGCACCGACATCGTTGGGCTCGAGTGCACTGAATGCAATAAGCGGTATACTTCCAGAAAAGGACTGCTGAGACACATACAGgTTCACGAGGGTAAAAAGTACTTGTGCGACATCTGTCCGAAAAAGTTCTACCGTCGAGAGCACCTAAAAATCCACGTTGCCAAGCACAACATGATCAAGCCCTACAAGTGTCCACGATGCAGTAAGCGTTTTATCAAGGAGGAGCAGCTAAACAGCCACGTGACGAAACACGACAGACCCTTCAAAAAGACGAAGGACACATCGTCGTCGAAGCGTTTCCTCTGCGAGATCTGCTCGAAGAGCTTCACGCAGTCCACGACGCTGATCGCCCACCTGCGCGCCCACAACGGCATCAAACCCTACGTCTGCGAGGTGTGCTCGCGGCCCTTCACCACAAACGCCTACCTCAAGATGCACATGCGCACCCACACGCAGGAGCGGCCGTACATCTGCCAGTACTGTTCTAGCGCGTTCGCCCGCGCGGACACCCTGGCTAATCACCTGACTTCGCACACCGGCGAGGCCAAGTACCACTGCAAGTATTGTCCAAAACACTTCCGCCGGCTCAAGTCGCTCAAGGAGCACGTCTTCATTCACACGGGCCAGCGGCCCTACGCCTGTCCTACCTGCGACCGGCGATTCAACAACAACGGCAGCAGGTACGCGCACAGCAAGCGCTGCAAGCAGAACCTGCTGCAGGGCAGGCAGCCCCAGCTCGCCGTGCAGATGCTCGAGGAACTGAGGACGGAGCAGAGCCAGCCGCAGGAGCAGGAGGAGGTGCAGGAACAGCAGCTGCAGTTGCACGAGCAGGAGATCCAGCAGAGGATACACCATGCGACCATCGGCCAGGCGCAGATCATCAAGCCGCAGAATATCAAGACCATTACGATCGCCAGGTCCGATCACAATGCTCTCGGGCAACACGTCATGGCGCATCAGGAGATTCTTATGCCCCTCATACTACCGCTCACCGTCACGCTTACGGATGTCGGTGAAGAGGTCATCTTGCCAGAGGGTACCAAGATTTTTACGGCGTAG
- Protein Sequence
- MEPGDGLPTGICCECNDKLEAAYKFKLQVEQADTVLREKLDSLNMKEDIFFSDDLSHRSDVGEITEESLLLKDHMDLLNVQKISEGNDVLQSIEKEECEIDMQQHQVEKEEQEEDDHAMNDNEQIHIQEDQQMQEMECEQQLVMDDNKNLQEIQDEEHNQSYEAQELQEMMFNEINNQEVMQEELNQSHQLAMHEHNYVVESQTCDITNENDIENDTLNQEEIKEDGEMENNIKENIEEQSMNGESEILNVPQESFSNQVTRRSKRKINQQKSNADRDSDEENYFENLNLSSRLKQVQMEKSEKVYYLCYLCEKQFISKEVLKEHMHSHEEVRKTLSTTKKNTEKVLKTPEKPQSASPTLSKPPSSGKRPNTCPHCGKEYLYIISYNKHLKQHEKEKSNVKEENMPLEVSFHEDDDALDFHDYENNPTVDSDSEDEEKKEEIEEQIRKISKKFASFKCNICDEKFVGMEKLKDHRSKHVVEGVLTEQDLRQDEEQFLAESIKIKEDESSSQEEGAEVKQEGDTKELKCPHCPMRYAHKKSLARHMESHCGTKYSCKLCHQSFTRKDHLRRHAEQHGNRLKSFRCTQCNKSFGNELTLRNHLIATNHKTIVHGQEYDPNKRIKRVAAKAAQRIIDQIKTDLNLDEEYEDDEEQDSDRDKGYECDIKSDNTGAEDEQLESSKKHQRSSGKSLYCETCNQRCTSKQALTRHMAQHVKDESTSKQQEKFKKEQQESMETEAKEDEDDMEEDDDNFEGGLGWLMDKHECPTCKKCYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRMCNICGDSFENNEILKEHRAKHVTEGILTEEDLREIEPRPEDKNGEKPPRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCPRCSKRFIKEEQLNSHVTKHDRPFKKTKDTSSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSSAFARADTLANHLTSHTGEAKYHCKYCPKHFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLLQGRQPQLAVQMLEELRTEQSQPQEQEEVQEQQLQLHEQEIQQRIHHATIGQAQIIKPQNIKTITIARSDHNALGQHVMAHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00713817;
- 90% Identity
- iTF_01381516;
- 80% Identity
- -