Ecal022037.1
Basic Information
- Insect
- Eurytoma californica
- Gene Symbol
- -
- Assembly
- GCA_035586675.1
- Location
- JAXIUT010018499.1:13671-18642[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0061 0.78 11.4 1.8 1 23 358 380 358 380 0.95 2 18 0.097 12 7.6 1.6 2 23 423 444 422 444 0.94 3 18 0.00093 0.12 13.9 0.3 2 23 508 529 507 529 0.97 4 18 0.00032 0.041 15.4 4.0 2 23 578 599 577 599 0.97 5 18 4e-05 0.0052 18.2 5.9 1 23 604 626 604 626 0.95 6 18 0.00094 0.12 13.9 0.7 1 21 633 653 633 657 0.92 7 18 0.0011 0.14 13.7 2.8 2 23 740 761 739 761 0.95 8 18 0.00012 0.015 16.7 6.0 1 23 811 833 811 833 0.97 9 18 0.00037 0.047 15.2 0.7 1 20 838 857 838 859 0.94 10 18 0.11 14 7.4 0.2 3 23 871 891 870 891 0.96 11 18 3.7e-05 0.0048 18.3 0.6 2 23 929 950 928 950 0.97 12 18 3.4e-05 0.0044 18.5 1.6 1 23 955 977 955 977 0.95 13 18 0.0001 0.013 17.0 1.5 1 23 983 1005 983 1005 0.98 14 18 6e-06 0.00077 20.8 0.4 1 23 1021 1043 1021 1043 0.95 15 18 4.9e-07 6.3e-05 24.3 0.6 1 23 1049 1071 1049 1071 0.99 16 18 5.3e-05 0.0068 17.9 0.2 1 23 1077 1099 1077 1099 0.97 17 18 0.00073 0.094 14.3 6.2 1 23 1105 1127 1105 1127 0.96 18 18 0.074 9.6 7.9 2.9 1 21 1133 1153 1133 1158 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTCGAGGTGACTACGTCGGGGGAGCCGAGAGCGGGCCTCGGCCACGTCTGCCGGGTCTGCCTCCTCGGCAGCCTCTTGGCCCGCGACCTCTACCACGGGGACGGCCTCCTCAGCCTGGCTGACAAAGCCATGGCCCTCGCCAGCGTTAAGatggAACCTGGAGATGGATTGCCGTCTAATATGTGTTGTGACTGCAGTGACAAACTGGAGGCTGCTTACAAGTTCAAGCTACAAGTAGAGGAAGCAGACAACGTTCTGCGAGAAAGACTGGACTCTTTACAAATGAAGGAggatctctttttttccgatGAAGATGTTAACTTATCGCATAGAAGTGACGTAGGGGAAATTACGGAGGAAAGCTTGTTGCTAAAGGATCACATGGATTTGTTGAATGTTCAAAAGATGAGCGAAGGAGAGGACGTTTTGCAGAGTGTACAGAAAGTAGAATGTGATATTGATTTGCAGCAGCATCAAGTAGAAAAGCAGGAGCAGCAAGAAGTTAACCAAGTGTTGAACCAAAGTGAACAGATGAATATTCAAGGAGATGAACAAATGCAGGTGATCGATGGCGAGCAACAGTTGGTAATGCAAgacgataaaaatttacaggaaatgCATGATGAGCAGCACAATCAGTCATTTGGAGCGCAAGAACTTCAGGAAATGATgttcaatgaaattaataatcaggAGGTAATGCAGGAGGAAATTAATCATAGTCATCAATTGGCTATGCACGAGCACAATTATGGGGTAGAATCACAAACTTGTGATATTACCAGTgaaaatgatatattaaatCAAGAGgaAATTGAGCAAGATAATAGAATGGAGCAGgatagtaaagaaaatatagaaaaacaaccaatgaatgaagaaaatgaaattcacaATGTGCCACAAGAATCTTTATCAAGTCAAGGAACACGCAGaagtaaaaggaaaataaatcaaaaatccAATGTTGACCGAGATTCtgatgaagaaaattattttgaaaatctcaATCTGAGCTCTAGATTAAAGCAAGTTCAGATGGAGAAATCGGAAAAAGTCTACTACCTGTGTTATTTGtgtgaaaaacaatttatatcgAAGGAAGTGCTGAAGGAGCACATGCATTCGCATGAGGAAGTTAGAAAAACTTTGTCCACTACGAAAAAGAATACTGATAAAGTGTTGAAAACACCAGAAAAACCACAAAGTGCCAGTCCAACTTTGCCCAAACCACCTTCAAGTGGAAAACGTCCAAACAAATGTCCACATTGTGGAAAGGAGTATTTGTACATTATTTCTTACAATAAACACTTGAAGCAAcatgaaaaagagaaaagcaaCGTAAAGGTGGAAACGATGCCCTTGGAAGTATCGTTTCACGAAGACGACGATGCTATAGATTTCCATGATTACGAAAACAATAGCACTGTAGACTCGGATATTGAGGACGAAGAGAAGACAGAAGAAACAGAAGAACAAGTTAAGAAATCCGGGAAGAAGCTTGCTTCTCTTAAATGTAACATCTGTGATCAAGAGTTTGCTGGAGCAGAAAAGTTAAAGGACCATAGATCAAAACATGTAGTAGAAGGCGAACTTACAGAACAAGATTTGAGGCAAGATGAAGAGGAATTTTCAGCAGAAACTTCTAAAAACAAAGAAGATGAACTCAGCAGTCAGGAGGAAGGCGCAGAAGCAAAGCAGGAGGACGTAGCAAAGGAGCTGAAATGTCCTCACTGCCGTATGCGATATGCGCACAAAAAGTCTTTGGCGCGTCACATGGAGAGCCACTGTGGCACGAAGTACAGCTGCAAGTTGTGCCATCAGAGCTTCACGCGCAAAGATCACCTTCGCCGCCACGCCGAGCAGCACGGCAACCGGCTCAAGAGCTTCAGGTGCACCCAATGTAATAAAAGCTTCGGCAACGAGCTCACTCTGCGGAACCACCTCATCGCGACTAATCATAAGACTGTAGTCCACGGCCAGGAGTACGATCCCAATAAGAGGATCAAGCGTGTTGCAGCCAAGGCCGCGCAAAGAATCATCGATCAGATTAAAACCGATCTAGACGAGGAGGATGAGGAAGATGATGATCAGGACAGCGATAGAGATAAGGGCTTTGAATGTGATATTAAGAGTGATGTTACTAGTGCCGAAGATGAACagTCGGAGGGATCAAAGAAGCAGCAGCGAAGTAGCGGCAAGTCGCTCTACTGCGAGACCTGCAATCAGAGATGTACCTCGAAGCAAGCCTTAACAAGGCACATGGCGCAGCACGTGAAGGATGAGAGTACGTCGaaacaacaagaaaaaatcaagaagGAACATCTGGAAAGCATCGAGAGCGAGGCGAAGGATGAAGAAGATGAAATGGAGGAGGACGACGACAACTTCGAGGGTGGACTGGGCTGGCTGATGGACAAGCACGAATGCCCGACCTGCAAAAAGTGTTACAGCACTAAGAAGTCGTTGCTCAGGCATCAACTGCTTCACGAGGAGCCGAATTTCGAGTGCGACATTTGCAATGTCAAGTTTTACCGCAAGGACAAACTCAAGGCGCACTACGATAAGTGCTCGGAGAAGAATCCGGATCAGGTGCGAATGTGCAACATCTGTGGCGATAGTTTCGAGAACAACGAAATTCTCAAGGAGCACCGTGCCAAACACGTCACTGAGGGTATTCTCACGGAGGAGGACCTCAGGGAAATCGAACCCAGGCCCGAGGATAAAAATGGCGAGAAACCTCCAAGGAAGAGACGCACCGATATCGTTGGGCTCGAGTGCACTGAGTGCAATAAGCAGTATACTTCTAGGAAGGGGCTGTTGAGACACATACAGgTACACGAAGGCAAAAAGTACCTGTGCGACATCTGCCCGAAGAAATTCTACCGTAGAGAGCACCTAAAAATCCACGTAGCCAAGCACAACATGATAAAGCCGTACAAGTGTCCCCGCTGCAGCAAGCGCTTCATCAAGGAGGAGCAGCTTAACAACCACGTGACAAAGCACGACAGGCCTTTCAAGAAGGCAAAGGACACGTCGTCGTCGAAGCGCTTCCTCTGCGAGATCTGTTCGAAGAGCTTCACGCAATCGACGACGCTGATCGCCCACCTGCGTGCCCACAATGGAATCAAGCCGTACGTGTGCGAGGTGTGCTCGCGGCCCTTCACCACCAACGCCTACCTCAAGATGCACATGCGCACCCACACGCAGGAGCGTCCTTACATCTGTCAGTACTGCTCGCGCGCGTTCGCTCGCGCCGACACCCTGGCCAACCACCTGACCTCGCACACCGGCGAGGCCAAGTACCACTGCAAGTACTGCCCGAAGCACTTCCGCCGGCTTAAGTCGCTCAAGGAGCACGTCTTCATACACACGGGCCAGCGGCCGTACGCCTGTCCCACCTGCGACCGGCGCTTCAACAACAACGGCAGTAGGTACGCGCACAGCAAACGCTGCAAGCAGCACCTGCTGCAGGACCGGCCGTCCCATATCACCGTGCACATGCTCGAGGACCTGAGGCCCGAGCAGGCGCAGCAGGCCCAGCAGGAACAGGAGGAGGTGCAAGAGCAGCAGCTGCAGCTGCATGATCAGGAGATCCAGCAGAGGATACACCACGCGACCATCGGCCAGGCGCAGATCATCAAGCCGCAGAACATCAAGACCATCACGATCGCTAGGTCGGATCATAATGCCCTCGGGCAGCACGTCATGGCGCACCAGGAGATACTCATGCCGCTCATACTGCCCCTCACCGTCACGCTCACGGACGTCGGCGAGGAGGTCATCTTGCCCGAGGGCACCAAGATTTTTACAGCGTAG
- Protein Sequence
- MDAVEVTTSGEPRAGLGHVCRVCLLGSLLARDLYHGDGLLSLADKAMALASVKMEPGDGLPSNMCCDCSDKLEAAYKFKLQVEEADNVLRERLDSLQMKEDLFFSDEDVNLSHRSDVGEITEESLLLKDHMDLLNVQKMSEGEDVLQSVQKVECDIDLQQHQVEKQEQQEVNQVLNQSEQMNIQGDEQMQVIDGEQQLVMQDDKNLQEMHDEQHNQSFGAQELQEMMFNEINNQEVMQEEINHSHQLAMHEHNYGVESQTCDITSENDILNQEEIEQDNRMEQDSKENIEKQPMNEENEIHNVPQESLSSQGTRRSKRKINQKSNVDRDSDEENYFENLNLSSRLKQVQMEKSEKVYYLCYLCEKQFISKEVLKEHMHSHEEVRKTLSTTKKNTDKVLKTPEKPQSASPTLPKPPSSGKRPNKCPHCGKEYLYIISYNKHLKQHEKEKSNVKVETMPLEVSFHEDDDAIDFHDYENNSTVDSDIEDEEKTEETEEQVKKSGKKLASLKCNICDQEFAGAEKLKDHRSKHVVEGELTEQDLRQDEEEFSAETSKNKEDELSSQEEGAEAKQEDVAKELKCPHCRMRYAHKKSLARHMESHCGTKYSCKLCHQSFTRKDHLRRHAEQHGNRLKSFRCTQCNKSFGNELTLRNHLIATNHKTVVHGQEYDPNKRIKRVAAKAAQRIIDQIKTDLDEEDEEDDDQDSDRDKGFECDIKSDVTSAEDEQSEGSKKQQRSSGKSLYCETCNQRCTSKQALTRHMAQHVKDESTSKQQEKIKKEHLESIESEAKDEEDEMEEDDDNFEGGLGWLMDKHECPTCKKCYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRMCNICGDSFENNEILKEHRAKHVTEGILTEEDLREIEPRPEDKNGEKPPRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCPRCSKRFIKEEQLNNHVTKHDRPFKKAKDTSSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKHFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQHLLQDRPSHITVHMLEDLRPEQAQQAQQEQEEVQEQQLQLHDQEIQQRIHHATIGQAQIIKPQNIKTITIARSDHNALGQHVMAHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00713817;
- 90% Identity
- iTF_00713105;
- 80% Identity
- -