Basic Information

Gene Symbol
-
Assembly
GCA_900480045.1
Location
UXGC01000282.1:127563-132666[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.0057 0.61 11.4 1.8 1 23 359 381 359 381 0.95
2 18 0.091 9.7 7.6 1.6 2 23 424 445 423 445 0.94
3 18 0.00032 0.034 15.3 0.3 2 23 509 530 508 530 0.97
4 18 4.4e-05 0.0046 18.0 2.7 2 23 579 600 578 600 0.97
5 18 3.8e-05 0.004 18.2 5.9 1 23 605 627 605 627 0.95
6 18 0.00089 0.094 13.9 0.7 1 21 634 654 634 658 0.92
7 18 0.001 0.11 13.7 2.8 2 23 742 763 741 763 0.95
8 18 0.00011 0.012 16.7 6.0 1 23 813 835 813 835 0.97
9 18 0.00034 0.037 15.2 0.7 1 20 840 859 840 861 0.94
10 18 0.11 11 7.4 0.2 3 23 873 893 872 893 0.96
11 18 3.5e-05 0.0037 18.3 0.6 2 23 931 952 930 952 0.97
12 18 3.2e-05 0.0034 18.5 1.6 1 23 957 979 957 979 0.95
13 18 9.4e-05 0.01 17.0 1.5 1 23 985 1007 985 1007 0.98
14 18 5.6e-06 0.0006 20.8 0.4 1 23 1023 1045 1023 1045 0.95
15 18 4.6e-07 4.9e-05 24.3 0.6 1 23 1051 1073 1051 1073 0.99
16 18 5e-05 0.0053 17.8 0.2 1 23 1079 1101 1079 1101 0.97
17 18 0.00069 0.073 14.3 6.2 1 23 1107 1129 1107 1129 0.96
18 18 0.013 1.4 10.2 0.4 1 20 1135 1154 1135 1156 0.89

Sequence Information

Coding Sequence
ATGGACGCCGTCGAGGTGACTACGTCGGGGGAGACGAGAGCGGGCCTCGGCCACGTCTGCCGGGTCTGCCTCCTCGGCAGCCACTTGGCCCGCGACCTCTACCACGGGGACGGCCTCCTCAGCCTCGCCGACAAAGCCATGGCCCTCGCCAGCGTTAAGATGGAACCTGGGGATGGATTGCCATCTATTATTTGTTGTGAGTGCAGTGATAAACTAGAGGCAGCTTACAAGTTCAAAGTACAAGTGGAGCAAGCAGACAACGTACTGCGAGAGAGACTGGACTCTTTAAACATGAAGGAGGATCTCTTTTTTACTGACGAAGATGTTAATCTATCGCATCGAAGTGACGTAGGGGAAATTACGGAGGAGAGTTTGCTGCTGAAGGACCACATGGATTTGTTGAATGTTCAAAAGATGAGCGATGGAGAGGATGTTTTACAGGGTGTAGAGAAAGTGGAGTGCGATATTGATATGCAGCAGCATGTAGTAGAAAAGCAGGAGCAGCAAGAAGTTGACCAAGCGTTGAACCAAAGCGAGCAGATTAATATTCAAGGAGATGAGCAAATGCAGGAGATCGACGGCGAGCAACAGTTGGTAATGCaagatgataaaaatttacaggaAATGCATGATGACCAGCACAATCAGTCGTTTGGAGCACAAGAACTTCAAGAAATGATgttcaatgaaattaataatcaggAGGTGATGCAGGAGGAAATTAATCATAGTCATCAATTGGCTATGCACGAGCACAATTATGGTGTAGAATCACAAACTTGCGATATTACCAGTGAAAATGATACATTACATCAAGAGgaAATTGAACAAGATACTGGAATGGAACAAGatagtaaagaaaatatagaaaaacaaccAATGAATGAAGAAAGTGAAATTCACAATGTGCCACAAGAATCTTCATCAAGTCAAGTAACACGCAGaagtaaaaggaaaataaatcaacaaaaatcCAATGTTGACCGAGATTCtgatgaagaaaattatttcgaaaatcttAATCTGAGCTCTAGATTGAAGCAAGTTCAGATGGAGAAATCGGAAAAAGTCTACTACCTGTGTTATTTGtgtgaaaaacaatttatatcgAAAGAAGTGTTGAAGGAACACATGCATTCGCAtgaagaaattagaaaaactttGTCCACTACGAAAAAGAGTATTGATAAAGTGTTAAAAACACCAGAAAAACCACAAAGTGCCAGTCCAACTTTGACCAAACCACCTTCAAGTGGAAAACGTCCAAATAAATGTCCCCATTGTGGAAAGGagtatttgtatattatttcttacaaTAAACACTTGAAGCAACATGAAAAAGAGAAGAGCAACACAAAGGCGGAAACAATGCCCTTGGAAGTATCATTCCAGGAAGACGATGATGCTATAGATTTCCAGGATTATGAAAACAACAGTATAGTAGACTCGGACATTGAGGACGAAGAGAAGGCAGAAGAAACAGAAGAACAAGTCAAGAAAACCGGAAAGAAACTTACTTCCCTTAAATGTAACATCTGTGATGAAGAGTTTTCTGGAGCAGAAAAGTTAAAGGATCATAGATCAAAACATGTACTGGAAGGTGCACTTACAGAACAAGATTTGAGGCAAGATGAAGAGGAGTTTTCAGCAGaaaccgctaaaaataaagaagatgaACCAAGCAGCCAGGAGGAAAGCGCAGAAGCAAAGCAGGAGGATGAAGCAAAAGAGCTGAAATGTCCTCACTGCCCTATGCGATATGCGCACAAAAAGTCTTTGGCGCGTCACATGGAGAGCCACTGTGGTACGAAGTACAGCTGCAAGTTGTGCCATCAGAGCTTCACGCGCAAAGATCACCTTCGCCGCCACGCCGAACAGCACGGTAACCGGCTCAAGAGCTTCAGGTGCACCCAGTGCAATAAAAGCTTCGGCAATGAGCTCACTCTGCGGAACCATCTCATCGCGACTAATCATAAGACTATCGTCCACGGCCAGGAGTACGATCCCAATAAGCGGATCAAGCGTGTTGCAGCCAAGGCCGCGCAGAGAATCATCGATCAGATTAAAACCGATTTAAATCTAGACGAGGATGAGGACGATGATGATCAGGACAGCGATAGAGATAAAGCCTTTGAATGTGATATTAGGAGTGACCTTACCAGTGCTGAAGAGGAGCagTCGGAGGGATCGAAAAAGCAGCAACGAAATAGCGGCAAGTCGCTCTACTGCGAGACCTGCAATCAGAGGTGCACCTCGAAACAAGCGTTAACAAGGCACATGGCGCAGCACGTGAAGGAAGAGAACATATTGAAACAACAAGAGAAAATCAAGAAAGAACATCTGGAAAGCCTCGAGAACGAGGCGAGGGAGGAAGAAGATGAAATGGAGGAGGACGACGACAACTTTGAGGGTGGATTGGGCTGGCTGATGGACAAGCACGAGTGCCCGACCTGCAAGAAGTGCTACAGTACTAAGAAGTCGCTGCTCAGGCATCAGCTACTCCACGAGGAGCCGAATTTCGAGTGCGACATCTGCAACGTCAAGTTTTATCGCAAAGACAAGCTCAAGGCGCACTACGACAAGTGCTCGGAGAAGAATCCGGATCAGGTGCGGATGTGCAACATTTGCGGCGACAGCTTTGAGAACAATGAAATTCTCAAGGAGCACCGTGCCAAGCACGTCACCGAGGGAATTCTCACGGAGGAGGACCTCAGGGAAATCGAACCCAGGCCCGAGGATAAAAACGGCGAGAAACCTCCCAGGAAGAGACGCACTGATATCGTTGGGCTCGAGTGCACTGAGTGCAATAAACAGTATACTTCAAGGAAAGGACTGTTGAGACACATTCAGgTCCACGAAGGCAAAAAGTACCTGTGCGACATCTGCCCGAAGAAGTTCTACCGTAGGGAGCACCTAAAAATCCATGTAGCCAAGCACAACATGATCAAGCCGTATAAGTGTCCCCGCTGCAGCAAGCGTTTCATCAAAGAGGAGCAGCTGAACAACCACGTGACGAAGCACGACAGGCCCTTCAAAAAAGCGAAGGACACGTCGTCGTCGAAGCGCTTCCTCTGCGAGATCTGCTCGAAGAGCTTCACGCAGTCGACGACGCTGATTGCCCACTTACGCGCCCACAACGGCATCAAGCCGTACGTGTGCGAGGTGTGCTCGCGGCCCTTCACCACTAATGCCTACCTCAAGATGCACATGCGCACCCACACGCAGGAGCGACCTTACATCTGCCAGTACTGCTCCCGGGCGTTCGCCCGCGCGGACACCTTGGCCAATCATCTGACTTCGCACACCGGCGAGGCCAAGTACCACTGCAAGTACTGCCCGAAGCACTTCCGCCGGCTCAAGTCGCTCAAGGAACATGTCTTCATACACACGGGTCAGCGGCCTTACGCCTGTCCTACCTGCGACCGGCGCTTCAACAACAACGGCAGCAGGTACGCGCACAGCAAACGCTGTAAGCAGAACCTGCTGCAAGGCAGGCCGTCCCAAATCACCGTGCACATGCTCGAGGAGCTGAGGCCCGAGCAGGAGCAGCCGGTTCAGCAGGAGCAGGAGGAGGTACAGGAGCAGCAGCTGCAACTGCAAGAGCAGGAGATCCAGCAGAGGATACACCACGCGACCATCGGCCAGGCGCAGATCATCAAGCCGCAGAACATCAAGACCATCACGATCGCCAGGTCCGATCACAATGCCCTCGGCCAGCACGTCATGGCGCACCAGGAGATACTCATGCCGCTCATACTGCCCCTTACCGTCACGCTCACGGACGTTGGCGAGGAGGTCATCTTGCCCGAGGGCACCAAGATTTTTACGGCGTAG
Protein Sequence
MDAVEVTTSGETRAGLGHVCRVCLLGSHLARDLYHGDGLLSLADKAMALASVKMEPGDGLPSIICCECSDKLEAAYKFKVQVEQADNVLRERLDSLNMKEDLFFTDEDVNLSHRSDVGEITEESLLLKDHMDLLNVQKMSDGEDVLQGVEKVECDIDMQQHVVEKQEQQEVDQALNQSEQINIQGDEQMQEIDGEQQLVMQDDKNLQEMHDDQHNQSFGAQELQEMMFNEINNQEVMQEEINHSHQLAMHEHNYGVESQTCDITSENDTLHQEEIEQDTGMEQDSKENIEKQPMNEESEIHNVPQESSSSQVTRRSKRKINQQKSNVDRDSDEENYFENLNLSSRLKQVQMEKSEKVYYLCYLCEKQFISKEVLKEHMHSHEEIRKTLSTTKKSIDKVLKTPEKPQSASPTLTKPPSSGKRPNKCPHCGKEYLYIISYNKHLKQHEKEKSNTKAETMPLEVSFQEDDDAIDFQDYENNSIVDSDIEDEEKAEETEEQVKKTGKKLTSLKCNICDEEFSGAEKLKDHRSKHVLEGALTEQDLRQDEEEFSAETAKNKEDEPSSQEESAEAKQEDEAKELKCPHCPMRYAHKKSLARHMESHCGTKYSCKLCHQSFTRKDHLRRHAEQHGNRLKSFRCTQCNKSFGNELTLRNHLIATNHKTIVHGQEYDPNKRIKRVAAKAAQRIIDQIKTDLNLDEDEDDDDQDSDRDKAFECDIRSDLTSAEEEQSEGSKKQQRNSGKSLYCETCNQRCTSKQALTRHMAQHVKEENILKQQEKIKKEHLESLENEAREEEDEMEEDDDNFEGGLGWLMDKHECPTCKKCYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRMCNICGDSFENNEILKEHRAKHVTEGILTEEDLREIEPRPEDKNGEKPPRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCPRCSKRFIKEEQLNNHVTKHDRPFKKAKDTSSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKHFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLLQGRPSQITVHMLEELRPEQEQPVQQEQEEVQEQQLQLQEQEIQQRIHHATIGQAQIIKPQNIKTITIARSDHNALGQHVMAHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00713817;
90% Identity
iTF_00713817; iTF_00714580;
80% Identity
-