Evul000956.1
Basic Information
- Insect
- Eupithecia vulgata
- Gene Symbol
- -
- Assembly
- GCA_946478135.1
- Location
- CAMLCK010000003.1:4235133-4238772[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.5e-05 0.0026 18.8 0.9 2 23 130 151 130 151 0.97 2 20 0.00083 0.062 14.4 5.9 1 23 156 178 156 178 0.97 3 20 2.8e-06 0.00021 22.2 0.4 1 23 198 220 198 220 0.98 4 20 0.00045 0.034 15.3 1.5 1 23 232 254 232 254 0.98 5 20 0.00012 0.009 17.1 2.3 1 23 259 281 259 281 0.99 6 20 2.6e-05 0.0019 19.2 0.2 2 23 286 309 285 309 0.92 7 20 4e-06 0.0003 21.7 0.6 1 23 315 337 315 337 0.97 8 20 0.00099 0.074 14.2 3.5 1 23 343 365 343 365 0.92 9 20 8.6e-06 0.00064 20.7 2.0 1 23 371 393 371 393 0.98 10 20 0.00012 0.0091 17.1 1.5 1 23 399 423 399 423 0.93 11 20 2.3e-06 0.00017 22.5 1.2 1 23 429 451 429 451 0.98 12 20 9.3e-05 0.0069 17.4 7.3 1 23 457 479 457 479 0.98 13 20 7.7e-05 0.0058 17.7 0.7 1 23 485 507 485 507 0.97 14 20 0.0083 0.62 11.3 3.3 1 23 513 535 513 535 0.96 15 20 0.00027 0.02 16.0 0.5 1 23 539 561 539 561 0.98 16 20 0.00019 0.015 16.4 3.5 3 23 569 591 567 591 0.91 17 20 2.8e-05 0.0021 19.1 1.1 1 23 597 619 597 619 0.97 18 20 8e-08 6e-06 27.1 0.3 1 23 625 647 625 647 0.98 19 20 0.0009 0.067 14.3 0.1 1 23 653 675 653 675 0.96 20 20 1.2e-06 9.1e-05 23.4 6.8 1 23 682 704 682 704 0.98
Sequence Information
- Coding Sequence
- ATGTCATCTTCAGTGTGCTGTGTCTGTCTGAATGGAGACCGTAAAATGAAATGCATTGAAGATATTGATCTCCGAAATATGTTTGAAAAACTTGCAAATGTAAAGGTAACAGAAGAAACTCTCATTATGATGAACTTAGATATACCTTCAAACTTATCAATCAGCAACAACAAGTCCATGTTCACAATATTTATCAATGAAGCTGATAACGAATTTACTGTTAAAGATGAACCAATATCTTTAAAACAAGAAGATATACCAGATGATATATTTGAAATGGCTTTTGCAGATGATATTGAGTCTGATGAACCAGTAAAGATACCCAAGAACTTAAAAGTAGAAAACTCTTCAATGAGCAAGAAAAAGTTAAGCGATTTCCAAGATAACTATTGTGATAAGTGTAATATACCGTTCATAAGCAAATATTACTTCAATAAACACATGAAAATTCATATTGAAGGGAAGTATTGCTGTGATAAGTGCCCTAAGAAGTTTAAATTCAAGAAAAGATTAGTTAAGCACATGTTAAACCATAGCGATGAGAAAGAAATCAGCCCGAAGCAAAAACAAGCTCAAAATATAACCTCTGGATACACCTGTGAAGTCTGCAACAAAACTGTCAGCAATCTGTACAACCTGCAACTACATATGTCTGTACACACTAAAAAGAAACCTGAGCCTACCACAACAGAATTTACCTGTGAAATCTGTAACAGAGGCTTGAACAATCTGCATAACTTACTTAAACATAAAGCAACTCATACAGAAGAAAAATACACATGTGAAACTTGTTCTAAAAGTTACTTAAACAGAGATTCTTGGAGAAAACATATGAGAACTCATTCAGCACAGCATGCTTGTGACTTCCCTGGTTGCGATAAAGTCTTTCCGCAGAGAAATCAATTAATAGTTCACTTAAGGGTACATACTGGTGAAAGGCCATTTGCTTGTGAAGAATGCGGGAAATCCTACACAAAAATGGAGTCCCTAAAAGTCCATCAGAAAATGCACTCGAATGAGAAACCACACAAGTGTATATCTTGCAATAAGTCGTTTAATTCTAAAGTTAATCTACTGAACCATTTAAAATCACACACTGACAGCAGTAGTTTTGAGTGTGAACATTGTAATAAGGGATTTTCGCTAGCTATACATTTAGAGAGGCATATGGTGACACACACCTCTGTCAGAAGGCATATATGTGAAGAGCCGGGTTGCGGAAAAGAATTTGCTAGACGCTTTCATTTAAAAGAACATAGTAGAATACATACAGGAGAAAGACCATTCTCATGCTCAGAGTGTGGTAAGACCTTTATGAAGTCAGAGTCTTTAAGATCTCATCTCAAAATTCACAGCGGAGACAAACCCCATAAGTGTGCTTCATGCTCCAAAGCATTTCACCGAAAGAGGAATCTGCAAAAACATATGAAAACACACGATGAAAAGGAGTCTTTCGACTGTGAGCATTGTGCTAAAACTTATACTCTACCCGTCCAATTAGAAACCCATATGCTAACTCATACAAACTTAAAACCCCACGCTTGCACCCACTGTGTCCTAACCTTTGCAGCTCTCAGCAGTTTGCACGCACACTTAAAAACCCACGAGTACAAATACACCTGTGACAGATGCGCAAAGAGTTTCGGCGAAAAAGGAACTCTTCAGAGTCATATAAAACTTCACGATGGAATAAAACCTCATTTGTGCGAGCACCCTGGTTGCGGCAAGGCTTTTGCCAGGCGCTACCATTTGAAAGAACACTCTCGCGTTCACACAAAAGAAAAACCTTTCATATGCAACGAATGTGGGAAGACGTACACACAAAGCAGTGCCCTATTCTTCCACCAGAGACTGCATAGTGGAGAAAGACCATTCGTCTGTGAAATCTGTGGTCGTACATTTACGGATAAGTATGGTCTGCAAAAACATGCTAGGGTGCACACGGGTGAGAAACCTTATGCTTGTGACAGCTGTGATCTTCGATTCGCATATGCAAGTGCTCTGCGCGATCACAGGGCCATACATGTGAATGGGGAGAAACCATACGCGTGTGATAGGTGTTTTAAGACCTTCTGTCGTAAGAGTAACCTGAAGAAGCATATGAAAACGCATTTAAGGGATaagcagttttttaaaagtCCGTGA
- Protein Sequence
- MSSSVCCVCLNGDRKMKCIEDIDLRNMFEKLANVKVTEETLIMMNLDIPSNLSISNNKSMFTIFINEADNEFTVKDEPISLKQEDIPDDIFEMAFADDIESDEPVKIPKNLKVENSSMSKKKLSDFQDNYCDKCNIPFISKYYFNKHMKIHIEGKYCCDKCPKKFKFKKRLVKHMLNHSDEKEISPKQKQAQNITSGYTCEVCNKTVSNLYNLQLHMSVHTKKKPEPTTTEFTCEICNRGLNNLHNLLKHKATHTEEKYTCETCSKSYLNRDSWRKHMRTHSAQHACDFPGCDKVFPQRNQLIVHLRVHTGERPFACEECGKSYTKMESLKVHQKMHSNEKPHKCISCNKSFNSKVNLLNHLKSHTDSSSFECEHCNKGFSLAIHLERHMVTHTSVRRHICEEPGCGKEFARRFHLKEHSRIHTGERPFSCSECGKTFMKSESLRSHLKIHSGDKPHKCASCSKAFHRKRNLQKHMKTHDEKESFDCEHCAKTYTLPVQLETHMLTHTNLKPHACTHCVLTFAALSSLHAHLKTHEYKYTCDRCAKSFGEKGTLQSHIKLHDGIKPHLCEHPGCGKAFARRYHLKEHSRVHTKEKPFICNECGKTYTQSSALFFHQRLHSGERPFVCEICGRTFTDKYGLQKHARVHTGEKPYACDSCDLRFAYASALRDHRAIHVNGEKPYACDRCFKTFCRKSNLKKHMKTHLRDKQFFKSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00699432; iTF_00700311; iTF_00697568; iTF_00701277; iTF_00703230; iTF_00702199; iTF_00705279;
- 90% Identity
- iTF_00699432; iTF_00700311; iTF_00701277; iTF_00705279; iTF_00703230;
- 80% Identity
- -