Eexi000808.1
Basic Information
- Insect
- Eupithecia exiguata
- Gene Symbol
- -
- Assembly
- GCA_947086465.1
- Location
- OX352255.1:5993812-5995830[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.3e-05 0.00085 19.9 0.9 2 23 88 109 88 109 0.97 2 20 0.0014 0.09 13.5 5.4 1 23 114 136 114 136 0.97 3 20 2.3e-06 0.00015 22.3 0.4 1 23 156 178 156 178 0.98 4 20 0.00019 0.012 16.3 1.5 1 23 190 212 190 212 0.98 5 20 5.6e-05 0.0036 17.9 1.6 1 23 217 239 217 239 0.99 6 20 2.1e-05 0.0013 19.3 0.2 2 23 244 267 243 267 0.92 7 20 3.3e-06 0.00021 21.8 0.6 1 23 273 295 273 295 0.97 8 20 0.0004 0.025 15.3 3.1 1 23 301 323 301 323 0.92 9 20 4.9e-06 0.00032 21.3 2.0 1 23 329 351 329 351 0.98 10 20 9.9e-05 0.0063 17.2 1.5 1 23 357 381 357 381 0.93 11 20 1.9e-06 0.00012 22.6 1.2 1 23 387 409 387 409 0.98 12 20 7.6e-05 0.0049 17.5 7.3 1 23 415 437 415 437 0.98 13 20 3e-05 0.0019 18.8 1.2 1 23 443 465 443 465 0.97 14 20 0.0023 0.15 12.9 1.7 1 23 471 493 471 493 0.96 15 20 3.1e-05 0.002 18.8 0.8 1 23 497 519 497 519 0.98 16 20 0.00016 0.01 16.5 3.5 3 23 527 549 525 549 0.91 17 20 2.3e-05 0.0015 19.2 1.1 1 23 555 577 555 577 0.97 18 20 3.6e-08 2.3e-06 28.0 0.6 1 23 583 605 583 605 0.98 19 20 0.00074 0.047 14.4 0.1 1 23 611 633 611 633 0.96 20 20 1e-06 6.4e-05 23.5 6.8 1 23 640 662 640 662 0.98
Sequence Information
- Coding Sequence
- ATGATGAACATAGAAATAACTTCAAACTTATCAATCAGCGACACTAAGTCTATGTTCACTATATCAATCAATGAAACTGACAATGAGTTCGCTGTTAAAGACGAACCAATATCTTTAAAACAGGAAGAAATACCAGATGATATATTTGAAATGACTTTTGCTGAGGATATTGAGTCAGATGAACCTTTAAAGATACCCAAGAACTTTAAAGTAGAAAACGCTTCAACAAGCAACGAAAACTTAAGCAATTTTCAAGATAACTATTGCAATAAATGCGATATACCGTTCATAAGCAAATATTACTTCAATAAACACATGAAAATTCATACACAAGATAAGTATTGCTGTGCTAAGTGCCCTAAAAAGTTTAAATTCAAGAAAAGATTAGTTAAACACATGTTAAACCATAGCGATCAGAAAGAAATCAGCCCGAAGCAAAAACAAACTAAAAATATATCCTCTGGATATACATGTGAAGTCTGCAACAAAACTGTCAGCAATCTGTACAACCTTCAGCTACACATGTCTGTACACACTAAGAAAAAACCTGAGCCTACTACTACTGAATTTACCTGTGACATCTGTAACAGAGCCTTGAACAATCTGCATAACTTACTAAAACATAAAGCTACTCATACAGAAGAAAAATACACATGCGACATTTGTTCTAGAAGCTACTTAAATAGGGATTCTTGGAGGAAACATATGAGAACTCATTCAGCACAGCATGCTTGTGACTTCCCTGGCTGCGATAAAGTCTTTCCTCAGAGAAATCAATTAATAGTTCACTTAAGGGTACATACCGGTGAGAGACCATTCGCTTGTGAAGAATGCGGGAAATCCTACACAAAAATGGAGTCCCTAAAAGTACACCAGAAAATGCATTCGAATGACAAACCACACAAGTGTATTTCTTGTAATAAGTCGTTTAATTCTAAAGTTAATCTGCTGAACCATATAAAATCACACACTGACAGCAACAGTTTTGAGTGTGAACATTGTAACAAGGCATTTTCGCTTGCTATACATTTAGAGAAGCATATGGTGACACATACATCTGTTAGAAGGCATATATGCGAAGAGCCGGGATGCGGAAAAGAATTTGCGAGACGCTTCCATTTAAAAGAACATAGTAGAATACATACAGGAGAAAGACCATTCTCATGCTCAGAGTGTGGTAAAACCTTTATGAAGTCGGAGTCTTTAAGATCGCATCTTAAAATTCACAGCGGAGACAAACCCCATAAGTGTGCTTCGTGCTCCAAAGCGTTTCACCGAAAGAGGAATCTACAAAAACATATGAAAACACACGACGAAAAGGAGTCTTTCGATTGTGAGCATTGTGCTAAAACTTATACTTTTCCCGTCCAACTGGAAACCCATATGCTAACCCATACAAACTTAAAACCCCACGCTTGCACCTACTGTGTCCTAACCTTTGCTGCTCTCAGCAGTTTGCACGCACATTTAAAAACCCACGAGTACAAATACACCTGTGACAGATGCGCAAAGAGTTTCAGCGAAAAAGGAACTCTTCAGAGTCATATAAAACTGCACGATGGAATAAAACCTCATTTGTGCGAGCACCCTGGTTGCGGCAAGGCTTTTGCCAGGCGCTACCATTTGAAAGAACACTCTCGCGTTCACACAAAAGAAAAACCTTTCATATGCAACGAATGTGGGAAGACATACACACAAAGCAGTGCTCTGTTCTTCCATCAGAGACTGCATAGCGGAGAAAGGCCATTCGTCTGTGAAATCTGTGGTCGTACATTCACAGATAAGTATGGTCTGCAAAAGCATACAAGGGTGCACACGGGTGAGAAACCGTATGCTTGTGACAGCTGTGATCTTAGATTCGCATATGCAAGTGCCCTGCGCGATCACAGGGCCATACATGTGAACGGAGAGAAGCCATACGCGTGTGACAGGTGTTTTAAGACCTTCTGTCGTAAGAGTAACCTGAAGAAGCATATGAAAACGCATTTAAGGGATAAACAGTATTTTAAAAGCCCGTGA
- Protein Sequence
- MMNIEITSNLSISDTKSMFTISINETDNEFAVKDEPISLKQEEIPDDIFEMTFAEDIESDEPLKIPKNFKVENASTSNENLSNFQDNYCNKCDIPFISKYYFNKHMKIHTQDKYCCAKCPKKFKFKKRLVKHMLNHSDQKEISPKQKQTKNISSGYTCEVCNKTVSNLYNLQLHMSVHTKKKPEPTTTEFTCDICNRALNNLHNLLKHKATHTEEKYTCDICSRSYLNRDSWRKHMRTHSAQHACDFPGCDKVFPQRNQLIVHLRVHTGERPFACEECGKSYTKMESLKVHQKMHSNDKPHKCISCNKSFNSKVNLLNHIKSHTDSNSFECEHCNKAFSLAIHLEKHMVTHTSVRRHICEEPGCGKEFARRFHLKEHSRIHTGERPFSCSECGKTFMKSESLRSHLKIHSGDKPHKCASCSKAFHRKRNLQKHMKTHDEKESFDCEHCAKTYTFPVQLETHMLTHTNLKPHACTYCVLTFAALSSLHAHLKTHEYKYTCDRCAKSFSEKGTLQSHIKLHDGIKPHLCEHPGCGKAFARRYHLKEHSRVHTKEKPFICNECGKTYTQSSALFFHQRLHSGERPFVCEICGRTFTDKYGLQKHTRVHTGEKPYACDSCDLRFAYASALRDHRAIHVNGEKPYACDRCFKTFCRKSNLKKHMKTHLRDKQYFKSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00706248;
- 90% Identity
- iTF_00706248;
- 80% Identity
- -