Epul023879.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eupithecia pulchellata
Gene Symbol
-
Assembly
GCA_963931895.1
Location
OZ007549.1:5169359-5174022[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0032 0.23 12.6 1.0 2 23 129 150 129 150 0.97
2 20 0.0021 0.15 13.2 4.9 1 23 155 177 155 177 0.97
3 20 2.8e-06 0.0002 22.2 0.4 1 23 196 218 196 218 0.98
4 20 0.00039 0.027 15.5 2.5 1 23 230 252 230 252 0.98
5 20 0.00027 0.02 15.9 2.2 1 23 257 279 257 279 0.99
6 20 0.00012 0.0082 17.1 0.6 2 23 284 307 283 307 0.92
7 20 2.3e-06 0.00016 22.5 0.7 1 23 313 335 313 335 0.97
8 20 0.00048 0.034 15.2 3.1 1 23 341 363 341 363 0.92
9 20 6e-06 0.00042 21.2 2.0 1 23 369 391 369 391 0.98
10 20 0.00012 0.0085 17.1 1.5 1 23 397 421 397 421 0.93
11 20 1.1e-06 8.2e-05 23.4 0.7 1 23 427 449 427 449 0.98
12 20 0.00013 0.0095 16.9 7.6 1 23 455 477 455 477 0.98
13 20 3.8e-05 0.0027 18.7 0.4 1 23 483 505 483 505 0.97
14 20 0.052 3.7 8.8 1.4 1 23 511 533 511 533 0.96
15 20 0.00027 0.019 16.0 0.5 1 23 537 559 537 559 0.98
16 20 0.00019 0.014 16.4 3.5 3 23 567 589 565 589 0.91
17 20 2.8e-05 0.002 19.1 1.1 1 23 595 617 595 617 0.97
18 20 4.4e-08 3.1e-06 27.9 0.6 1 23 623 645 623 645 0.98
19 20 0.0048 0.34 12.0 0.1 3 23 653 673 651 673 0.96
20 20 1.2e-06 8.6e-05 23.4 6.8 1 23 680 702 680 702 0.98

Sequence Information

Coding Sequence
atgtCAACTACAGTGTGCCGTGTCTGTCTTATCGGAAACCGTAAAATGAAATGCATTGAAGATATTGAACTCCAAAGTGTTTTTGAGAGACTTACCAATCAAAAGGCAACAGAAGAAACTCTCGTTATGATGAACATAGACATAAAATCAAACTTATCAATCAGCAATGATAAATCCATGTTTACTGTATCAATCAATGAAGCTGACAATGAATTAACTGTAAAAGAGGAACCTATGTCTTTAAAACAGGAAGAAATACCAGAGGATCTGTTTGAAATGGCTTTTGCTGATGATTTTGAGTCAGATGAACCATTACAAGTAACTAAGAGCTTAAAACTAGAAAATGCTTCaagaaaagaaaaactaagcGATTTCCAAGATAACTATTGCAATCAGTGCAATATACCGTTTTTAAGCAAATATTATTACAACAAACACATGAAAATTCATATCGAAGGGAAGTACTGCTGCGATAAATGCCCTAAGCAGTTTAAATTCAAGAAAAGATTGGTAAAACACATATTAAACCACAGCAATAACAAAGAAATCAGTCCGAAAAATCAAACGAAAGAAATATCTTCTGGATACACATGTGAAGTCTGTAACAAAACTGTCAGTAATCTGTACAACCTCCAACTCCACATGTCTGTACATACTAAGAAAAAACCCGAGCCTACCACAACTGAATTTACCTGTGACATATGTAATAGACGCTTGAACAATCTACACAACTTACTAAAGCATAAAGCGAcacacacagaagaaaaatacacatgCGATACATGTTCTAGAAGCTACTTAAATAGGGATTCTTGGAGGAAACACATGAGGACTCATTCGGCACAGCATGCTTGTGACCACCCTGGATGTGAAAAAGTCTTTCCGCAAAGAAATCAATTAATAGTTCACCTTAGGGTGCACACCGGTGAAAGACCATTCGCCTGTGACGAATGTGGAAAATCCTACACGAAAATGGAATCCCTAAAAGTCCATCAAAAAACGCACTCGAATGAAAAACCACATAAGTGTATATCTTGCAATAAGTCATTTAATTCTAAAGTTAATCTACTGAACCATATAAAATCACACACAGATAGCAATAGTTTTGAGTGCGAACACTGTAACAAAGCATTTTCGTTAGCTATACATTTAGAGAAACATATGGTGACACATACATCTGTCAGGAGGCACATATGCGAAGAGCCCGGATGCGGTAAGGAATTTGCAAGACGCTTCCATTTAAAGGAACATAGTAGAATACATACTGGTGAAAGACCGTTCTCGTGCTCAGAGTGTGGTAAGACCTTTATGAAGTCAGAGTCTTTGAGAGCTCATCTTAAAATTCACAGCGGAGACAAGCCCCATAAGTGTGTATCATGCTCTAAAGCATTTCACCGGAAACGGAATCTACAGAAACACATGAAAACACACGACGAAAAGGAGTCTTTTGATTGTGAGCATTGTGCTAAAACTTTTGCCCTACCCGTCCAATTAGAAACACATATGCTAacccatacaaacataaaacCCCACGCTTGCACCCAGTGCATACTAACCTTTGCTGCTCTAAGCAGTTTGCACGCACATATAAAAACTCACGAGTACAAATACACCTGTGACAGATGCGCAAAAAGTTTCGGCGAAAAAGGTACACTTCAGAGTCATATCAAACTCCACGATGGAATAAAACCTCATTTGTGCGAGCACCCTGGCTGCGGCAAGGCGTTTGCCAGGCGCTACCATTTGAAAGAACATTCCCGCGTTCACACAAAAGAAAAACCTTTTATATGCAACGAATGTGGCAAGACATATACACAAAGCAGTGCTCTATTCTTCCATCAGAGACTGCATAGCGGTGAGAGACCGTTTGTGTGTGAAATCTGTGGTCGGACCTTCACAGATAAGTATGGTTTACAAAAACATACAAGGGTACATACAGGAGAGAAACCGTACGGTTGCGACAGTTGTGATCTAAGGTTCGCGTACGCAAGTGCCTTGCGTGATCACAGGGCTATACATGTGAACGGAGAGAAACCGTACGCGTGCGATCGGTGCTTTAAGACTTTCTGTCGTAAGAGTAACTTGAAGAAGCACATGAAAACGCATTTGAGGGATAAACAGTTTTTTAAAAGCCCGTGA
Protein Sequence
MSTTVCRVCLIGNRKMKCIEDIELQSVFERLTNQKATEETLVMMNIDIKSNLSISNDKSMFTVSINEADNELTVKEEPMSLKQEEIPEDLFEMAFADDFESDEPLQVTKSLKLENASRKEKLSDFQDNYCNQCNIPFLSKYYYNKHMKIHIEGKYCCDKCPKQFKFKKRLVKHILNHSNNKEISPKNQTKEISSGYTCEVCNKTVSNLYNLQLHMSVHTKKKPEPTTTEFTCDICNRRLNNLHNLLKHKATHTEEKYTCDTCSRSYLNRDSWRKHMRTHSAQHACDHPGCEKVFPQRNQLIVHLRVHTGERPFACDECGKSYTKMESLKVHQKTHSNEKPHKCISCNKSFNSKVNLLNHIKSHTDSNSFECEHCNKAFSLAIHLEKHMVTHTSVRRHICEEPGCGKEFARRFHLKEHSRIHTGERPFSCSECGKTFMKSESLRAHLKIHSGDKPHKCVSCSKAFHRKRNLQKHMKTHDEKESFDCEHCAKTFALPVQLETHMLTHTNIKPHACTQCILTFAALSSLHAHIKTHEYKYTCDRCAKSFGEKGTLQSHIKLHDGIKPHLCEHPGCGKAFARRYHLKEHSRVHTKEKPFICNECGKTYTQSSALFFHQRLHSGERPFVCEICGRTFTDKYGLQKHTRVHTGEKPYGCDSCDLRFAYASALRDHRAIHVNGEKPYACDRCFKTFCRKSNLKKHMKTHLRDKQFFKSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00706248;
90% Identity
-
80% Identity
-