Eedi036169.1
Basic Information
- Insect
- Euphydryas editha
- Gene Symbol
- -
- Assembly
- GCA_036937285.1
- Location
- JAUPFZ010000028.1:10551448-10554689[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00075 0.11 14.3 4.3 1 23 155 178 155 178 0.98 2 17 0.00013 0.018 16.8 2.1 1 23 187 210 187 210 0.97 3 17 0.03 4.2 9.3 0.8 2 23 223 245 223 245 0.97 4 17 0.00036 0.052 15.3 0.8 1 23 254 277 254 277 0.97 5 17 3.7e-05 0.0053 18.5 1.3 1 23 289 312 289 312 0.97 6 17 1.2e-05 0.0017 20.0 0.7 2 23 342 364 341 364 0.97 7 17 0.00039 0.055 15.3 1.3 2 23 374 396 373 396 0.96 8 17 0.044 6.3 8.8 1.0 3 19 402 418 401 421 0.93 9 17 0.00034 0.049 15.4 2.1 2 21 426 445 425 448 0.94 10 17 0.0099 1.4 10.8 1.4 2 23 457 479 456 479 0.95 11 17 0.0009 0.13 14.1 2.6 1 23 484 507 484 507 0.95 12 17 4.5e-05 0.0064 18.2 0.9 2 23 518 540 517 540 0.96 13 17 0.00063 0.091 14.6 0.4 1 23 563 586 563 586 0.94 14 17 0.0038 0.54 12.1 1.0 2 23 620 641 619 641 0.97 15 17 0.78 1.1e+02 4.9 0.6 3 23 649 671 647 671 0.90 16 17 0.014 2 10.3 0.2 1 23 707 729 707 729 0.97 17 17 0.18 25 6.9 2.0 1 23 735 758 735 758 0.96
Sequence Information
- Coding Sequence
- atgtcaataaaagAAGAGAAACTAGATGTGAAAGATATAAAAGTTGAAAAACACGATGATGACAGGAAAGATCCGACATTCTTCTTACCAGAAGAGCCGATGACGTAcgaaattaaaactaaaaagaagaaaaaaaagaaaacacagGAGGATCCATTTAAAGATATCGAAGAAAAAGTTTCATTACCAACACCTACAGTTTATGATCCGAATAATGATACGGAGACTGAGCCTGTCTTGGATCCAGAAGTCACTATAAAAGTTGAAAATATTGAAGTTGAGTTGGATTTTAATGATtttgcTAATGATAATGGATTGATGGTAGAAGGCCCACAAAGTGAAGATAGTCAAGAGCCAGCTGTGAAAATCGAAGAACAAAATCACGAAGCAGTTCTTCTTACATTCGAAAGTATAATCAATGACAAAAGTGTCTTGGGTTTCGGTCCAACGCCAGCGCCAAATTATGTGTGCAAAATTTGTCATCTAGTCTTTCAAACGACAAAAACACTTAGAATGCACCAAAAGAGAAAACATAAAGTATTCAGGAAATCATTCAAATATATATGTCATTATTGTTCGATGTCGTACGAACAGAAGAATAGCCTCGTCGCCCATATCAAAAGAAAACACGGTCCCGATTCAGCCAATGATGACGGTGAAGAGAGAACGTGTGACGTTTGTGCGTTAGTTTTCAAAGGTATGACCAGATTACGAATGCACATGCGGAGAAAACATGGATCCTTTGAAGAGTCGTTCAAACATGTCTGTGAGGATTGTGGCTTGACTTACGACAAATATAGAAGTCTCATCGTACATATACAGAGGAAGCATACGAATGAGAAAAAGCCTGTAATAGATCAGTGGTACAATTGTCCCTTCTGTCCAAAAGTATTTACTAAAAGGGAAACGTATGCGAGACACGTACAGAGGAAACATCGTGTTGATGACGAAGACGATGGCAAGCCAGATGATGAAACAGAAAGTCtattaaaaaattgcaaaaacgAAGAGACGGGAGAAATAACTTGCAAAGAATGCCCTCTAGTCTTTTCCTCGCTCAATTATTTAAAGCTTCACATGAGAAGGAAGCACAACGCGTTAAAAGAAGATTTTCGTCTCAAATGTAGAATCTGCAATTTGTCCTATGATAAGATCGAAAGCTTAAAACGGCATATACGAAGGAAACACGATAAAGGGTCTTTTTGTGAAGTGTGCGATAAGCAGTTCGAAACTAGGGATATGTATTTAACTCATTCACACAAAAGAACGATTCAAGAATGTAATATTTGCGGATTAGTATTTGCGTCACAGGGTGGTTTGTGCAAACATTTGCGGTGTACGCATAAAATACAGTCACCGAAAACTATTGTTTGTACTTTGTGCAATGAAACTTTCCACGATAAACGGCAATTGAAGCCTCATTACATGAAAGTCCATTTGAAAGTGTCGTACACTTGCAACTTTTGCAAGAAGATATTCAAAGCAAAGGAAAGTTATCGACGACACGTACTACTGAAACATCCTACGAGTAAACCGAAAAGTGATCATCAAAGTTGTGATCAATGTAACGAAACGTTTAGTGACGAGTTTGAGTTGTGTCGTCACATAAATATCGCACATGGTAAATCGCAGGCCGGTGAAATATCATTGATAGAAATCAAGAAGGAAGAAGAAATTCCAGACACTTTCCAATGCTCGAAATGTCCTGAAAATTATGGCAATTGGGAACAATTGAAACTACATTATGAGCAGAATCATCAAATAGTACCTGAAACGCAGTGTCAAGTGTGCGGTGAATTGATACCTGGGAATGAATTGCAGAAGCATTTAAAAGCGTTACACACAGATACAACGGTTCAGTGTAAATATTGTGAATTTGAAACGAATAATCGCGCTAGTATGACTCAGCATATGTTGAGACACAAAAACGCGACTACTATTAACTGTGATTTCCCTGGTTGTAAATACAAAACGTTCTATGAAGATGCCATGGAAAAGCATAAAAGAAAGCACGCTGATCAAGGCGTGAAACTCCAGTGCACCCAGTGTCCGTTCCAAACGATGAACAAGTATATATTGAAATATCATGAAGAAGCCCATGTTACGGGTAAAAAACGTTACTCCTGTGATCAATGTGATTATGCAACAATATTGCCAGCAAACTTAGTTcaacataaatacaaacattcCTCGGAAAAGAGGTTCAAATGCGAAGTTTGTCCATTTGCAACAAAGTACAATACGTCGTTACGTTTCCATGTTAAAAAGAAACATTGTGATCTCCCAACATTCAGTtaa
- Protein Sequence
- MSIKEEKLDVKDIKVEKHDDDRKDPTFFLPEEPMTYEIKTKKKKKKKTQEDPFKDIEEKVSLPTPTVYDPNNDTETEPVLDPEVTIKVENIEVELDFNDFANDNGLMVEGPQSEDSQEPAVKIEEQNHEAVLLTFESIINDKSVLGFGPTPAPNYVCKICHLVFQTTKTLRMHQKRKHKVFRKSFKYICHYCSMSYEQKNSLVAHIKRKHGPDSANDDGEERTCDVCALVFKGMTRLRMHMRRKHGSFEESFKHVCEDCGLTYDKYRSLIVHIQRKHTNEKKPVIDQWYNCPFCPKVFTKRETYARHVQRKHRVDDEDDGKPDDETESLLKNCKNEETGEITCKECPLVFSSLNYLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHIRRKHDKGSFCEVCDKQFETRDMYLTHSHKRTIQECNICGLVFASQGGLCKHLRCTHKIQSPKTIVCTLCNETFHDKRQLKPHYMKVHLKVSYTCNFCKKIFKAKESYRRHVLLKHPTSKPKSDHQSCDQCNETFSDEFELCRHINIAHGKSQAGEISLIEIKKEEEIPDTFQCSKCPENYGNWEQLKLHYEQNHQIVPETQCQVCGELIPGNELQKHLKALHTDTTVQCKYCEFETNNRASMTQHMLRHKNATTINCDFPGCKYKTFYEDAMEKHKRKHADQGVKLQCTQCPFQTMNKYILKYHEEAHVTGKKRYSCDQCDYATILPANLVQHKYKHSSEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01033959;
- 90% Identity
- iTF_00985379; iTF_00986490; iTF_01507434; iTF_01080099; iTF_01508263; iTF_01078413; iTF_01079250; iTF_01080918; iTF_01506550; iTF_00824959;
- 80% Identity
- -