g14076.t1
Basic Information
- Insect
- Nymphalis c-album
- Gene Symbol
- -
- Assembly
- GCA_905332345.1
- Location
- CAJOBY010000026.1:1115204-1118493[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0016 0.12 13.3 4.1 1 23 113 136 113 136 0.98 2 17 0.00012 0.0091 16.9 2.1 1 23 145 168 145 168 0.97 3 17 0.028 2.1 9.4 0.8 2 23 181 203 181 203 0.97 4 17 0.00034 0.026 15.4 0.8 1 23 212 235 212 235 0.97 5 17 3.5e-05 0.0027 18.5 1.3 1 23 247 270 247 270 0.97 6 17 1.1e-05 0.00085 20.1 0.7 2 23 300 322 299 322 0.97 7 17 0.00037 0.028 15.3 1.3 2 23 332 354 331 354 0.96 8 17 0.019 1.4 9.9 0.9 2 19 359 376 358 379 0.92 9 17 0.00032 0.025 15.5 2.1 2 21 384 403 383 406 0.94 10 17 0.0093 0.71 10.9 1.4 2 23 415 437 414 437 0.95 11 17 0.0012 0.095 13.7 2.6 1 23 442 465 442 465 0.95 12 17 3.3e-05 0.0025 18.6 0.7 3 23 477 498 475 498 0.96 13 17 0.00019 0.014 16.2 0.4 1 23 525 548 525 548 0.94 14 17 0.0016 0.12 13.3 0.9 2 23 582 603 581 603 0.97 15 17 4.4 3.3e+02 2.5 0.7 3 23 611 633 609 633 0.89 16 17 0.013 1 10.4 0.2 1 23 669 691 669 691 0.97 17 17 0.17 13 7.0 2.0 1 23 697 720 697 720 0.96
Sequence Information
- Coding Sequence
- ATGCCTGAAGTATGTACATATCCATTTAAAGATATCGAAGAAAAAGTTGCACTACCGACACCCACGTATTACGATCCTGTAAACGAACGAGAGCCTGAACCAGTTCTGGATCCAGAAGTTAATATAAAGGTTGAAAATATTGAAGTCGAGTTGGATTTTAATGATttcGCTAACGATAATGGATTAATGTTAGAAGGTCCGCAAAGTGAAGATAGTCAAGAACCGGCTGTGAAAATCGAAGAACAAAATCATGAAGCGGTGTTATTAACATTTGAAAGTATAATCAGCGATAAAAGCGTCATCGGTTTCGGCCCAGTCGCGGCACCAGCTCCTAACTACGTGTGCAAAGTTTGTCATCTAGTCTTTCAATCGACAAAAACGCTTAGAATGCATCAGAAAAGGAAACACAAAGTATTTAGGaaatcgtttaaatatatatgtcattATTGCTCAATGTCGTACGAACAGAAGAATAGTCTCGTTGCCCATATCAAAAGGAAACATGGACCAGATTCAGTTAACGATGACGGTGAAGAGAGGACGTGTGATGTGTGCGCGTTAGTTTTTAAGGGTATGACGAGATTACGTATGCATATGCGGAGGAAACACGGATCCTTTGAAGAGTCTTTCAAACATGTTTGTGAGGATTGCGGTCTTACTTACGACAAATATAGAAGTTTAATCGTACACATACAGAGGAAACATTCGAATGAAAAGAAGCCAGATCTAGAACAGTGGTACAATTGTCCGTTCTGCCCCAAAGTGTTCACGAAGAGGGAAACGTACGCGAGACACGTACAAAGAAAGCATCGTGTGAACGATGACGATGACGTCAAACCCGATGACGACACGGAGAACCTTTTGAAGAATTGTAAGAATGAAGAGACTGGAGAAATAACGTGTAAAGAATGCCCTCTAGTCTTCTCCTCGCTCAATTATCTTAAACTACACATGAGAAGAAAGCACAACGCGTTAAAGGAAGATTTTCGCTTAAAATGTAGAATTTGCAATTTGTCATATGACAAAATTGAAAGCTTAAAACGTCATATACGAAGAAAACACGATAAGGGGTCTTATTGTGACGTGTGCGATAAACAATTCGAAACTAGGGATATGTATCTGAATCATTCACACAAGAGGATGATACAGGAGTGTAACATTTGTGGGTTAGTGTTCGCGTCGCAGGGTGGGTTGTGCAAACATTTGCGGTGTACGCATAAAATACAATCACCGAAAACAATTGTCTGTACTTTGTGTAACGAAACGTTTCACGATAAACGACAATTGAAGCCACATTACATGAAGGTGCATCTTAAAGTATCGTACACTTGTAGTTTCtgcaagaaaatatttaaagcgaAAGAAAGTTATAGACGGCACGTGCTCTTAAAACATCCTTCAAGTCAGCCGAAAAATGATAATCAGAACTGCGATCAGTGTGACGAAACATTCTCTGACGAATTCGAATTATGTCGTCACATAAATATCGCACACGGTAAATCGCAAACCGGAGAAATAGGACCCCTATCGTTGATAGAAATCAAAAAGGAAGAAGTCGAAATCCCAGACACCTTCCAATGCTCAAAATGTCCTGAAAATTATGCAAATTGGGAGCAATTGAAATTACATTATGAACAGAATCATCAAATAGTACCTGAAACGCAATGCCAAGTTTGCGGTGAACTGATACCTGGTAACGAACTGCAGAAGCATTTAAAAGCGTTACACACGGACACAACGGTCCAGTGTAAATATTGTGAATTCGAAACGAGTAATCGTGCTAGTATGACACAGCACATGTTGCGCCACAAAAACGCGACTACCCTTAACTGTGATTTCCCCGGTTGTAAATACAAGACGTTCTACGAAGATGCCATGGATAAGCATAAGAGGAAGCACGCCGATCAGGGAGTTAAACTCCAGTGTTCGCAATGTCCGTTCCAAACTATGAATAAGTATATCCTGAAATATCACGAAGAAGCCCACGTTACGGGCAAGAAGAGGTATTCCTGTGATCAATGCGATTACGCAACTATATTGCCAGCGAACTTAGTTCAACACAAATACAAACATTCCTCGGAGAAGAGGTTCAAATGCGAAGTCTGTCCATTCGCAACAAAGTACAACACGTCGTTACGTTTCCACGTCAAGAAGAAACATTGTGATCTCCCGACATTCAGttaa
- Protein Sequence
- MPEVCTYPFKDIEEKVALPTPTYYDPVNEREPEPVLDPEVNIKVENIEVELDFNDFANDNGLMLEGPQSEDSQEPAVKIEEQNHEAVLLTFESIISDKSVIGFGPVAAPAPNYVCKVCHLVFQSTKTLRMHQKRKHKVFRKSFKYICHYCSMSYEQKNSLVAHIKRKHGPDSVNDDGEERTCDVCALVFKGMTRLRMHMRRKHGSFEESFKHVCEDCGLTYDKYRSLIVHIQRKHSNEKKPDLEQWYNCPFCPKVFTKRETYARHVQRKHRVNDDDDVKPDDDTENLLKNCKNEETGEITCKECPLVFSSLNYLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHIRRKHDKGSYCDVCDKQFETRDMYLNHSHKRMIQECNICGLVFASQGGLCKHLRCTHKIQSPKTIVCTLCNETFHDKRQLKPHYMKVHLKVSYTCSFCKKIFKAKESYRRHVLLKHPSSQPKNDNQNCDQCDETFSDEFELCRHINIAHGKSQTGEIGPLSLIEIKKEEVEIPDTFQCSKCPENYANWEQLKLHYEQNHQIVPETQCQVCGELIPGNELQKHLKALHTDTTVQCKYCEFETSNRASMTQHMLRHKNATTLNCDFPGCKYKTFYEDAMDKHKRKHADQGVKLQCSQCPFQTMNKYILKYHEEAHVTGKKRYSCDQCDYATILPANLVQHKYKHSSEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01033959;
- 90% Identity
- iTF_00695898;
- 80% Identity
- -