Vcar014695.1
Basic Information
- Insect
- Vanessa cardui
- Gene Symbol
- -
- Assembly
- GCA_905220365.1
- Location
- LR999951.1:8144760-8149167[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0016 0.14 13.2 4.1 1 23 164 187 164 187 0.98 2 17 0.00012 0.01 16.8 2.1 1 23 196 219 196 219 0.97 3 17 0.028 2.4 9.3 0.8 2 23 232 254 232 254 0.97 4 17 0.00036 0.03 15.3 0.8 1 23 263 286 263 286 0.97 5 17 3.5e-05 0.003 18.4 1.3 1 23 298 321 298 321 0.97 6 17 1.1e-05 0.00097 20.0 0.7 2 23 351 373 350 373 0.97 7 17 0.00037 0.032 15.2 1.3 2 23 383 405 382 405 0.96 8 17 0.019 1.6 9.8 0.9 2 19 410 427 409 430 0.92 9 17 0.00033 0.028 15.4 2.1 2 21 435 454 434 457 0.94 10 17 0.0095 0.81 10.8 1.4 2 23 466 488 465 488 0.95 11 17 0.00087 0.074 14.1 2.6 1 23 493 516 493 516 0.95 12 17 5.7e-05 0.0048 17.8 1.0 3 23 528 549 526 549 0.96 13 17 0.00019 0.016 16.1 0.4 1 23 576 599 576 599 0.94 14 17 0.0016 0.14 13.2 0.9 2 23 633 654 632 654 0.97 15 17 4.5 3.8e+02 2.4 0.7 3 23 662 684 660 684 0.89 16 17 0.014 1.2 10.3 0.2 1 23 720 742 720 742 0.97 17 17 0.17 14 6.9 2.0 1 23 748 771 748 771 0.96
Sequence Information
- Coding Sequence
- ATGTCTATAAAAGAAGAAAATGTAGATATAAAAGATATAAAAGATGTAAAAGATATAAAAATTGAAAAACTTGATGATGTAGACAGAAAGGACCCGACGTCATTTTTACCCGAAGAGCCAATGTCGTATGAAATAAAAACTAAAAAGAAGAAAAAAAAGAAAAAACAAGAAGATCCATTTAAAGACATTGAAGAAAAAGTTGCATTACCAACACCAACATATTATGATCCCGTGAATGAAGTAGATCCTGAGCCAGTTTTGGATCCAGAAGTTAATATAAAGGTTGAAAATATTGAAGTTGAGTTGGATTTTAATGATTTCGCCAATGATAATGGATTGATGTTAGAAGGTCCGCAAAGTGAAGATAGTCAAGAACCGGCTGTGAAAATCGAAGAACAAAATCATGAAGCAGTGTTATTAACATTTGAAAGTATAATTAACGATAAGAGCGTCATCGGTTTTGGCCCAGTCGCAGCTCCAGCTCCAAATTACGTGTGCAAAGTTTGTCATCTAGTCTTTCAATCGACGAAAACGCTTAGAATGCATCAGAAGAGAAAACATAAAGTGTTTAGGAAATCCTTCAAATATATATGCCATTATTGCTCAATGTCATACGAACAGAAAAATAGTCTCGTGGCCCATATCAAAAGGAAACATGGACCAGATTCAGTGAATGATGACGGTGAAGAGAGAACGTGTGATGTTTGTGCGTTAGTGTTTAAAGGTATGACGAGGTTACGTATGCATATGCGGAGAAAACATGGATCTTTTGAGGAATCGTTCAAACACGTGTGCGATGATTGTGGACTGACGTACGATAAATACAGGAGCTTAATCGTACATATACAAAGAAAGCATTCGAACGAAAAAAAGCCAGTCATAGACCAATGGTACAATTGTCCATTCTGTCCTAAAGTCTTCACAAAAAGGGAAACGTATGCGAGACACGTACAAAGAAAACATCGTGTGAACGACGATGAAGATGAAAAACCAGACGTTGATACAGAAAACCTCCTGAAAAACTGCAAGAACGAAGAGACGGGAGAAATAACGTGCAAAGAATGTCCTCTAGTCTTTTCCTCGCTCAATTATCTTAAACTTCACATGAGAAGAAAGCACAATGCGTTGAAGGAAGATTTCCGTTTAAAATGTAGAATCTGCAATTTGTCGTACGACAAAATTGAAAGTTTAAAACGTCATATACGAAGAAAACACGATAAAGGGTCTTATTGTGACGTGTGCGATAAACAATTCGAAACTAGGGATATGTATCTGAATCATTCACACAAGAGAATGATCCAGGAATGTAACATTTGCGGACTAGTATTCGCATCTCAGGGTGGTCTGTGCAAACATTTGCGGTGTACGCATAAAATACAATCTCCGAAAACGATTGTCTGTACTTTGTGTAACGAAACGTTTCACGACAAACGACAATTGAAGCCACATTATATGAAGGTGCATTTGAAAGTTTCGTACACGTGCAATTTCTGCAAGAAGATATTTAAGGCGAAAGAGAGTTACAGGCGGCATGTGCTCTTGAAACATCCGTCAAGTAAACCGAAAAGTGATAATCAGAATTGCGATCAGTGTAACGAAACGTTCTCTGACGAATTTGAGTTATGTCGTCACATTAACATCGCACACGGTAAGGCGCAAGCAGGCGAAATGGGACCGCTATCGTTGATAGAAATCAAAAAGGAAGAAGTCGAAATCCCAGACACCTTCCAATGCTCAAAATGTCCCGAAAATTATGCGAATTGGGAGCAGCTGAAACTGCATTACGAACAGAATCATCAAATAGTACCTGAAACACAATGTCAAGTTTGCGGCGAACTGATACCGGGTAATGAACTACAGAAGCATTTAAAAACACTACACACGGACACGACGGTTCAGTGTAAATACTGTGAATTCGAAACGAGTAATCGTGCAAGTATGACACAGCATATGCTGCGTCACAAAAACGCGACTACCCTCAACTGTGATTTTCCCGGTTGTAAGTACAAGACGTTCTATGAAGATGCAATGGATAAACACAAGAGAAAGCATGCTGATCAGGGTGTGAAACTCCAGTGTTCCCAATGTCCGTTCCAAACGATGAATAAATATATACTGAAATATCACGAAGAGGCCCACGTTACGGGTAAGAAGAGGTATTCCTGTGATCAATGCGATTACGCAACCATATTGCCAGCGAACTTAGTTCAACACAAGTATAAACATTCCTCCGAAAAGAGGTTCAAGTGCGAAGTCTGTCCATTCGCAACAAAGTACAATACGTCGTTACGTTTCCACGTTAAGAAGAAACATTGTGATCTCCCAACATTCAGTTAA
- Protein Sequence
- MSIKEENVDIKDIKDVKDIKIEKLDDVDRKDPTSFLPEEPMSYEIKTKKKKKKKKQEDPFKDIEEKVALPTPTYYDPVNEVDPEPVLDPEVNIKVENIEVELDFNDFANDNGLMLEGPQSEDSQEPAVKIEEQNHEAVLLTFESIINDKSVIGFGPVAAPAPNYVCKVCHLVFQSTKTLRMHQKRKHKVFRKSFKYICHYCSMSYEQKNSLVAHIKRKHGPDSVNDDGEERTCDVCALVFKGMTRLRMHMRRKHGSFEESFKHVCDDCGLTYDKYRSLIVHIQRKHSNEKKPVIDQWYNCPFCPKVFTKRETYARHVQRKHRVNDDEDEKPDVDTENLLKNCKNEETGEITCKECPLVFSSLNYLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHIRRKHDKGSYCDVCDKQFETRDMYLNHSHKRMIQECNICGLVFASQGGLCKHLRCTHKIQSPKTIVCTLCNETFHDKRQLKPHYMKVHLKVSYTCNFCKKIFKAKESYRRHVLLKHPSSKPKSDNQNCDQCNETFSDEFELCRHINIAHGKAQAGEMGPLSLIEIKKEEVEIPDTFQCSKCPENYANWEQLKLHYEQNHQIVPETQCQVCGELIPGNELQKHLKTLHTDTTVQCKYCEFETSNRASMTQHMLRHKNATTLNCDFPGCKYKTFYEDAMDKHKRKHADQGVKLQCSQCPFQTMNKYILKYHEEAHVTGKKRYSCDQCDYATILPANLVQHKYKHSSEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01033959;
- 90% Identity
- iTF_00695898;
- 80% Identity
- -