Vtam017488.1
Basic Information
- Insect
- Vanessa tameamea
- Gene Symbol
- -
- Assembly
- GCA_037043105.1
- Location
- CM073302.1:6837696-6840642[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0018 0.13 13.2 4.1 1 23 158 181 158 181 0.98 2 17 0.00013 0.0097 16.8 2.1 1 23 190 213 190 213 0.97 3 17 0.031 2.2 9.3 0.8 2 23 226 248 226 248 0.97 4 17 0.00038 0.027 15.3 0.8 1 23 257 280 257 280 0.97 5 17 3.8e-05 0.0028 18.5 1.3 1 23 292 315 292 315 0.97 6 17 1.2e-05 0.0009 20.0 0.7 2 23 345 367 344 367 0.97 7 17 0.0004 0.029 15.2 1.3 2 23 377 399 376 399 0.96 8 17 0.021 1.5 9.8 0.9 2 19 404 421 403 424 0.92 9 17 0.00036 0.026 15.4 2.1 2 21 429 448 428 451 0.94 10 17 0.01 0.75 10.8 1.4 2 23 460 482 459 482 0.95 11 17 0.00094 0.069 14.1 2.6 1 23 487 510 487 510 0.95 12 17 3.7e-05 0.0027 18.5 0.7 3 23 522 543 520 543 0.96 13 17 0.00021 0.015 16.2 0.4 1 23 570 593 570 593 0.94 14 17 0.0017 0.13 13.2 0.9 2 23 627 648 626 648 0.97 15 17 4.8 3.5e+02 2.4 0.7 3 23 656 678 654 678 0.89 16 17 0.015 1.1 10.3 0.2 1 23 714 736 714 736 0.97 17 17 0.18 13 6.9 2.0 1 23 742 765 742 765 0.96
Sequence Information
- Coding Sequence
- atgtctataaaagaagaaaatgtagatataaaagatataaaaactgaaaaacaAGATGATGTAGACAGAAAGGATCCCACATCGTTCTTACCCGAAGAGCCAAtgacatatgaaataaaaactaaaaagaagaaaaaaaagaaaaaacaagaaGACCCATTTAAAGACATCGAAGAAAAAGTTGCATTACCGACACCGACATATTATGATCCTGTGAATGAGGTCGATCCTGAGCCAGTTTTGGATCCAGAGGTTAATATAAAGGTTGAAAATATCGAAGTTGAGTTGGATTTTAATGATttcgCCAATGATAATGGATTAATGTTAGAAGGTCCGCAAAGTGAAGATAGTCAAGAACCGGCTGTGAAAATCGAAGAACAAAATCATGAAGCAGTGTTATTAACATTTgaaagtataattaatgataaaagcGTCATCGGTTTTGGACCAGTCGCAGCTCCAGCTCCAAATTACGTGTGCAAAGTTTGTCATCTAGTCTTTCAATCGACAAAAACGCTTAGAATGCATCAGAAAAGAAAACACAAAGTGTTTAGGAAAtccttcaaatatatttgtcattatTGCTCAATGTCATACGAACAGAAAAATAGTCTCGTTGCCCATATTAAAAGGAAACATGGACCAGATTCAGTGAATGATGACGGTGAAGAGAGAACATGTGATGTTTGTGCGTTAGTGTTTAAAGGTATGACGAGGTTACGTATGCATATGCGGAGAAAACATGGATCTTTTGAAGAGTCGTTCAAACACGTGTGCGAGGATTGTGGACTGACGTACGACAAATACAGAAGCTTAATTGTACATATACAGAGGAAGCATTCGAATGAAAAAAAACCAGTTCTAGACCAATGGTACAATTGTCCATTCTGCCCTAAAGTCTTCACAAAAAGAGAAACATACGCGAGACACGTACAAAGAAAGCATCGTGTGAACGACGATGAAGATGAAAAACCTGACGATGAAACAGAAAACCTCTTGAAAAATTGCAAGAACGAAGAGACGGGCGAAATAACGTGTAAAGAATGTCCTCTAGTCTTTTCCTCGCTCAATTATCTTAAACTTCACATGAGAAGAAAGCACAATGCGTTAAAGGAAgattttcgtttaaaatgtaGAATCTGCAATTTGTCGTACGACAAAATTGAAAGCTTAAAACGTCATATACGAAGAAAACACGATAAGGGTTCTTATTGTGACGTTTGCGATAAACAATTCGAAACTAGGGATATGTATCTGAATCATTCACACAAGAGAATGATACAGGAATGTAACATTTGTGGACTAGTATTCGCATCTCAGGGTGGGTTGTGCAAACATTTGCGGTGTACGCATAAAATACAATCACCGAAAACAATTGTCTGTACTTTGTGTAACGAAACGTTTCACGATAAACGACAATTGAAGCCACATTATATGAAGGTGCATTTGAAAGTTTCGTACACGTGCAATTTCTGCAAGAAGATATTTAAAGCGAAAGAGAGTTATAGGCGTCATGTGCTCTTAAAACATCCATCAAGTAAACCGAAAAGTGATAATCAGAATTGCGATCAGTGCGATGAAACATTCTCGGACGAATTTGAATTATGTCGTCACATAAACATCGCACACGGTAAATCGCAAACCGGAGAAATGGGACCCCTATCTTTGATAGAAATCAAAAAGGAAGAAGTCGAAATTCCAGACACCTTCCAATGCTCAAAATGTCCCGAAAATTATGCAAATTGGGAGCAGTTAAAACTGCATTATGAACAGAATCATCAAATAGTACCTGAAACTCAATGCCAAGTTTGCGGTGAACTGATACCGGGTAACGAACTGCAGAAGCATTTAAAAACACTACACACGGATACAACGGTTCAGTGTAAATATTGTGAATTCGAAACGAGTAATCGTGCCAGTATGACACAACACATGTTGCGTCACAAAAACGCGACTACCCTTAACTGTGATTTTCCCGGTTGTAAATACAAGACGTTCTACGAAGATGCAATGGATAAACACAAGAGGAAGCATGCTGATCAGGGTGTTAAACTCCAGTGTTCCCAATGTCCGTTTCAAACGATGAACaagtatatactaaaatatcacGAAGAGGCCCACGTTACGGGGAAGAAAAGGTATTCCTGTGATCAATGCGATTACGCAACTATATTGCCAGCGAACTTAgttcaacacaaatataaacattcctCCGAGAAGAGGTTCAAATGTGAAGTTTGTCCATTCGCAACAAAGTACAATACGTCGTTACGTTTCCATGTTAAGAAGAAACATTGTGATCTCCCAACATTCagttaa
- Protein Sequence
- MSIKEENVDIKDIKTEKQDDVDRKDPTSFLPEEPMTYEIKTKKKKKKKKQEDPFKDIEEKVALPTPTYYDPVNEVDPEPVLDPEVNIKVENIEVELDFNDFANDNGLMLEGPQSEDSQEPAVKIEEQNHEAVLLTFESIINDKSVIGFGPVAAPAPNYVCKVCHLVFQSTKTLRMHQKRKHKVFRKSFKYICHYCSMSYEQKNSLVAHIKRKHGPDSVNDDGEERTCDVCALVFKGMTRLRMHMRRKHGSFEESFKHVCEDCGLTYDKYRSLIVHIQRKHSNEKKPVLDQWYNCPFCPKVFTKRETYARHVQRKHRVNDDEDEKPDDETENLLKNCKNEETGEITCKECPLVFSSLNYLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHIRRKHDKGSYCDVCDKQFETRDMYLNHSHKRMIQECNICGLVFASQGGLCKHLRCTHKIQSPKTIVCTLCNETFHDKRQLKPHYMKVHLKVSYTCNFCKKIFKAKESYRRHVLLKHPSSKPKSDNQNCDQCDETFSDEFELCRHINIAHGKSQTGEMGPLSLIEIKKEEVEIPDTFQCSKCPENYANWEQLKLHYEQNHQIVPETQCQVCGELIPGNELQKHLKTLHTDTTVQCKYCEFETSNRASMTQHMLRHKNATTLNCDFPGCKYKTFYEDAMDKHKRKHADQGVKLQCSQCPFQTMNKYILKYHEEAHVTGKKRYSCDQCDYATILPANLVQHKYKHSSEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01033959;
- 90% Identity
- iTF_00695898;
- 80% Identity
- -