Etes003584.1
Basic Information
- Insect
- Eulithis testata
- Gene Symbol
- -
- Assembly
- GCA_947507515.1
- Location
- OX382216.1:519781-523689[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.027 5.5e+02 1.0 0.1 25 49 178 202 175 205 0.87 2 14 0.00085 18 5.8 0.0 21 52 278 309 274 311 0.94 3 14 0.0034 70 3.8 0.0 21 45 306 330 302 333 0.87 4 14 0.0025 52 4.3 0.1 21 49 374 402 369 407 0.90 5 14 0.03 6.1e+02 0.8 0.0 23 40 433 450 421 458 0.73 6 14 0.0026 53 4.2 0.1 23 48 501 526 497 529 0.90 7 14 4.8e-05 0.98 9.8 0.1 24 46 531 553 528 555 0.91 8 14 0.037 7.6e+02 0.5 0.0 21 48 596 623 593 626 0.85 9 14 0.012 2.4e+02 2.1 0.0 21 43 692 714 687 720 0.78 10 14 0.35 7.2e+03 -2.6 0.0 22 44 720 742 711 746 0.77 11 14 0.00018 3.7 7.9 0.0 21 46 747 772 743 781 0.89 12 14 0.049 1e+03 0.1 0.1 26 52 780 806 773 808 0.86 13 14 0.019 4e+02 1.4 0.1 21 47 803 829 792 832 0.86 14 14 0.0023 48 4.4 0.4 21 44 832 855 829 863 0.88
Sequence Information
- Coding Sequence
- ATGCCTGATACAACTTTATGCCGAGTGTGTCTTGCCGATAACATCAAAATGCACGAGATTATCAACACTCGGTATCAGGAGATGTTTGAAAGGTTCACTGGAGAGATGTTGGTTCCCGGTGATGGGCGGCCCGAGACCCTGTGCTACCTCTGCCATTCACAAGTACAGAAATGCTGGAGGTTCTTTGAGATGGCTCGGAACTCGGAGATGAATCTATCAAAATTACTTATTTATGGAGTACAACTGACTCAAGTATCAGTAGCTCTTATTGACAAAGTGAATGTCCACAATCTATCAGTCTCCACTATCAAGAAAACCTTTGACTACACATTCTGTGATGATGTTAAAGAGGAATCCGGAAGCCCTGTCAAAACGGAGTTGGCTGATGACAAGACAGTACAACTTATTAGTGAAATCGAAGATCTAGCAACAGAAACTTTCGATGACCATTCAGAGTCCGATCCACTTGAAGCTGTTAAAATAGTCAATGTCAAAGTAGAAGATGAATCAGGCATGCTGCCAGTAACTTCTCATACATGTGACATATGTCAACGACTGTTTAACACATATAATGGTTTGACACGGCACAAGAGTATAGCTCACAAACAAAAAGATAAAAATAAAATAAAAAATAAATGTACAACATGTGGAGAAACATTCTCAAATCCACATCTTTTGAAAATACATATGCGATTTCACAAGAAAAATGATGTATACACGGAAAGTTTAATAGTTTCAATTACAACGGGAGAAAAATTTGGCTGTATACTGTGCAAGAAGACGTTCACACAAAAAGGGCATTTAAAAACACATATCATGGCTTTCCATACCGGAGAACGACCATATGCATGTGAACTGTGTGACAAGAAGTTTGTACAAAAAAGTAATCTAGGAACACATATGAGAACTAATCACACGAAGAAACCGTTCACTTGCTCAGTGTGCGATGGAGTCTGTGATGATGAGAACCACTTGAAAGAACATATGAGTGTCCACAGTGGTGTAAGTGAGGAACAAATTAATAGTTTGGATAATACGAAGCCGTTTACTTGCGAGAGCTGTGGGAAATCGTTTTCAGCGAAATCTCATTTAAAATCTCATGTCATGGCAATACACACTGGGGAACGCCCGTTCGCGTGCGGAATGTGTGACAAAAAATACACTCAAAAAAGTCATTTAAGACTCCACGCGAGATTGTCACACGTAATCGAAAAACCCTTCGCCTGTGACGAATGTGAGATGAGGTTTGATGACGCGGAAAGTTTAAAAAAACACGCGAAAACTCATGCGGAATTACAAGTATTCACATGCCCTACCTGCAGTAGAGTAATGTATTCAGAAGCTAGTTATAATAAGCACGTGCTAAGTCACACTGAGCATAACGATATCGATGAGATAAAAGTCGCAAAAGTAAAACCTTTTGGTTGCGTGATGTGTAACAAAAGATTTGGATGGAAATCGCATTTAAAATCGCACATAATGGCGATCCACACCGGACAGAGACCTTTTGCCTGCAGCTTATGCGATAAAACATTCGTCCAACGAAGCAATCTAAGACTGCACGCGAAAGTAGCGCATTCTATAGTAAACCCATTGAATTGTAGCATTTGCAAACGAGTGTTCAGAAATGAAGAGAATTTAAAAAAACATATGAGTATCCACAGCGAGGGAGCTATAGATTATGGTGCAAATCAAGATAAATCAAAGAAATTCCCTTGCTCATTGTGTAATAAAAGATTTAATTGGAAATCCCATCTTAAAACTCATATAATGGCGTTACACACAGATGAAAGACCATTTGTATGCGGTGTGTGCCATAAAAAATTCGTCACAAAAAGCTACCTAAGATATCACATGAAGTACATACATCCCGGAGAAAAAGCGACACAGCAAATGCTAAACATAGGCAGACAGTATACTTGCAATGTATGCGCGATCAAATTCACAAGCAAAATAAACTTCGAGAAGCATAGAACCTTGCACACAGATACTCCTCCGTTCCTGTGCGTTAAATGCGATAAAAAATTCAACTCTAAAACAGATCTAAATGTACACAACTTAAGTTTACACGCCGAAGAACTGCCGTTTACGTGTGATATATGTCACTCTCGTTTCGAAGACCACGCAGCATTAAAAACACATAATACAACACACATTGAGAATAAACTGACTTGTGACACTTGTGGTCGAACATTTCTTGCCCGGAGCGCTCTCAAACGGCACATGGTGATCCATAGCGATGAGAAACCGTTCTCGTGTAAAGTTTGCAAGAAGGCCTTCAAACAGGAGCGCGTGTTAAAATCACACATGCAAATACACACAGAGGTGAAACAATTTGGCTGCAACATATGCGATAGAAGGTTCTACCAACGAGGTAACTTGACCAGTCATATGAGAATTCACTCCGGAGAGAAGCCATACGTCTGCGACCGCTGCGGGAACAGTTTTAACCAAAAAAGTCATCTACGCACGCACGTTTTATTCATCCACAGTACAGAGAAACCGTTCACTTGTACGGTTTGTAACAAAAAGTTCAGGCTAAGGAGTTGTTTGAGGAATCATCAGATGGTGCATACCGGGGAACGACCGTATCCATGCGATAAATGTGAAAAGAAATATTACAAGAAGGGAGAATTGAAGTCGCACGTTTTGAAAATGCATTCGTAA
- Protein Sequence
- MPDTTLCRVCLADNIKMHEIINTRYQEMFERFTGEMLVPGDGRPETLCYLCHSQVQKCWRFFEMARNSEMNLSKLLIYGVQLTQVSVALIDKVNVHNLSVSTIKKTFDYTFCDDVKEESGSPVKTELADDKTVQLISEIEDLATETFDDHSESDPLEAVKIVNVKVEDESGMLPVTSHTCDICQRLFNTYNGLTRHKSIAHKQKDKNKIKNKCTTCGETFSNPHLLKIHMRFHKKNDVYTESLIVSITTGEKFGCILCKKTFTQKGHLKTHIMAFHTGERPYACELCDKKFVQKSNLGTHMRTNHTKKPFTCSVCDGVCDDENHLKEHMSVHSGVSEEQINSLDNTKPFTCESCGKSFSAKSHLKSHVMAIHTGERPFACGMCDKKYTQKSHLRLHARLSHVIEKPFACDECEMRFDDAESLKKHAKTHAELQVFTCPTCSRVMYSEASYNKHVLSHTEHNDIDEIKVAKVKPFGCVMCNKRFGWKSHLKSHIMAIHTGQRPFACSLCDKTFVQRSNLRLHAKVAHSIVNPLNCSICKRVFRNEENLKKHMSIHSEGAIDYGANQDKSKKFPCSLCNKRFNWKSHLKTHIMALHTDERPFVCGVCHKKFVTKSYLRYHMKYIHPGEKATQQMLNIGRQYTCNVCAIKFTSKINFEKHRTLHTDTPPFLCVKCDKKFNSKTDLNVHNLSLHAEELPFTCDICHSRFEDHAALKTHNTTHIENKLTCDTCGRTFLARSALKRHMVIHSDEKPFSCKVCKKAFKQERVLKSHMQIHTEVKQFGCNICDRRFYQRGNLTSHMRIHSGEKPYVCDRCGNSFNQKSHLRTHVLFIHSTEKPFTCTVCNKKFRLRSCLRNHQMVHTGERPYPCDKCEKKYYKKGELKSHVLKMHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00686546; iTF_00738005; iTF_00737667;
- 90% Identity
- iTF_00686546;
- 80% Identity
- iTF_00686546;