Etes003584.1
Basic Information
- Insect
- Eulithis testata
- Gene Symbol
- -
- Assembly
- GCA_947507515.1
- Location
- OX382216.1:519781-523689[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.003 0.18 12.5 1.7 1 23 178 201 178 201 0.95 2 23 2.7e-06 0.00016 22.1 2.3 2 23 212 233 211 233 0.97 3 23 0.00082 0.05 14.3 2.6 5 23 257 276 255 276 0.92 4 23 2.6e-07 1.6e-05 25.3 0.7 1 23 282 305 282 305 0.97 5 23 0.0016 0.1 13.3 1.3 1 23 310 332 310 332 0.98 6 23 6.9e-06 0.00042 20.8 1.1 1 23 349 372 349 372 0.94 7 23 2.3e-05 0.0014 19.1 2.1 1 23 378 401 378 401 0.95 8 23 4.8e-05 0.0029 18.1 0.2 1 23 407 429 407 429 0.97 9 23 0.035 2.1 9.1 0.5 1 23 435 457 435 457 0.98 10 23 0.012 0.73 10.6 0.9 3 23 476 497 474 497 0.94 11 23 2.4e-06 0.00015 22.3 0.3 1 23 503 526 503 526 0.95 12 23 1.3e-06 8.2e-05 23.0 0.9 2 23 533 554 532 554 0.96 13 23 0.00026 0.016 15.8 1.8 1 23 571 594 571 594 0.95 14 23 8.7e-06 0.00053 20.5 3.4 1 23 600 623 600 623 0.97 15 23 0.00065 0.04 14.6 1.3 1 23 639 661 639 661 0.97 16 23 0.00053 0.032 14.9 1.1 1 23 667 690 667 690 0.91 17 23 0.012 0.73 10.6 3.5 1 23 696 718 696 718 0.97 18 23 0.00074 0.045 14.4 0.2 2 23 724 745 723 745 0.96 19 23 2.2e-05 0.0013 19.2 1.4 1 23 751 773 751 773 0.98 20 23 8.3e-07 5e-05 23.7 0.8 3 23 781 801 779 801 0.98 21 23 4.3e-05 0.0026 18.3 1.9 1 23 807 830 807 830 0.93 22 23 6.7e-05 0.0041 17.7 5.0 1 23 836 858 836 858 0.98 23 23 0.00029 0.018 15.7 1.1 1 23 864 887 864 887 0.96
Sequence Information
- Coding Sequence
- ATGCCTGATACAACTTTATGCCGAGTGTGTCTTGCCGATAACATCAAAATGCACGAGATTATCAACACTCGGTATCAGGAGATGTTTGAAAGGTTCACTGGAGAGATGTTGGTTCCCGGTGATGGGCGGCCCGAGACCCTGTGCTACCTCTGCCATTCACAAGTACAGAAATGCTGGAGGTTCTTTGAGATGGCTCGGAACTCGGAGATGAATCTATCAAAATTACTTATTTATGGAGTACAACTGACTCAAGTATCAGTAGCTCTTATTGACAAAGTGAATGTCCACAATCTATCAGTCTCCACTATCAAGAAAACCTTTGACTACACATTCTGTGATGATGTTAAAGAGGAATCCGGAAGCCCTGTCAAAACGGAGTTGGCTGATGACAAGACAGTACAACTTATTAGTGAAATCGAAGATCTAGCAACAGAAACTTTCGATGACCATTCAGAGTCCGATCCACTTGAAGCTGTTAAAATAGTCAATGTCAAAGTAGAAGATGAATCAGGCATGCTGCCAGTAACTTCTCATACATGTGACATATGTCAACGACTGTTTAACACATATAATGGTTTGACACGGCACAAGAGTATAGCTCACAAACAAAAAGATAAAAATAAAATAAAAAATAAATGTACAACATGTGGAGAAACATTCTCAAATCCACATCTTTTGAAAATACATATGCGATTTCACAAGAAAAATGATGTATACACGGAAAGTTTAATAGTTTCAATTACAACGGGAGAAAAATTTGGCTGTATACTGTGCAAGAAGACGTTCACACAAAAAGGGCATTTAAAAACACATATCATGGCTTTCCATACCGGAGAACGACCATATGCATGTGAACTGTGTGACAAGAAGTTTGTACAAAAAAGTAATCTAGGAACACATATGAGAACTAATCACACGAAGAAACCGTTCACTTGCTCAGTGTGCGATGGAGTCTGTGATGATGAGAACCACTTGAAAGAACATATGAGTGTCCACAGTGGTGTAAGTGAGGAACAAATTAATAGTTTGGATAATACGAAGCCGTTTACTTGCGAGAGCTGTGGGAAATCGTTTTCAGCGAAATCTCATTTAAAATCTCATGTCATGGCAATACACACTGGGGAACGCCCGTTCGCGTGCGGAATGTGTGACAAAAAATACACTCAAAAAAGTCATTTAAGACTCCACGCGAGATTGTCACACGTAATCGAAAAACCCTTCGCCTGTGACGAATGTGAGATGAGGTTTGATGACGCGGAAAGTTTAAAAAAACACGCGAAAACTCATGCGGAATTACAAGTATTCACATGCCCTACCTGCAGTAGAGTAATGTATTCAGAAGCTAGTTATAATAAGCACGTGCTAAGTCACACTGAGCATAACGATATCGATGAGATAAAAGTCGCAAAAGTAAAACCTTTTGGTTGCGTGATGTGTAACAAAAGATTTGGATGGAAATCGCATTTAAAATCGCACATAATGGCGATCCACACCGGACAGAGACCTTTTGCCTGCAGCTTATGCGATAAAACATTCGTCCAACGAAGCAATCTAAGACTGCACGCGAAAGTAGCGCATTCTATAGTAAACCCATTGAATTGTAGCATTTGCAAACGAGTGTTCAGAAATGAAGAGAATTTAAAAAAACATATGAGTATCCACAGCGAGGGAGCTATAGATTATGGTGCAAATCAAGATAAATCAAAGAAATTCCCTTGCTCATTGTGTAATAAAAGATTTAATTGGAAATCCCATCTTAAAACTCATATAATGGCGTTACACACAGATGAAAGACCATTTGTATGCGGTGTGTGCCATAAAAAATTCGTCACAAAAAGCTACCTAAGATATCACATGAAGTACATACATCCCGGAGAAAAAGCGACACAGCAAATGCTAAACATAGGCAGACAGTATACTTGCAATGTATGCGCGATCAAATTCACAAGCAAAATAAACTTCGAGAAGCATAGAACCTTGCACACAGATACTCCTCCGTTCCTGTGCGTTAAATGCGATAAAAAATTCAACTCTAAAACAGATCTAAATGTACACAACTTAAGTTTACACGCCGAAGAACTGCCGTTTACGTGTGATATATGTCACTCTCGTTTCGAAGACCACGCAGCATTAAAAACACATAATACAACACACATTGAGAATAAACTGACTTGTGACACTTGTGGTCGAACATTTCTTGCCCGGAGCGCTCTCAAACGGCACATGGTGATCCATAGCGATGAGAAACCGTTCTCGTGTAAAGTTTGCAAGAAGGCCTTCAAACAGGAGCGCGTGTTAAAATCACACATGCAAATACACACAGAGGTGAAACAATTTGGCTGCAACATATGCGATAGAAGGTTCTACCAACGAGGTAACTTGACCAGTCATATGAGAATTCACTCCGGAGAGAAGCCATACGTCTGCGACCGCTGCGGGAACAGTTTTAACCAAAAAAGTCATCTACGCACGCACGTTTTATTCATCCACAGTACAGAGAAACCGTTCACTTGTACGGTTTGTAACAAAAAGTTCAGGCTAAGGAGTTGTTTGAGGAATCATCAGATGGTGCATACCGGGGAACGACCGTATCCATGCGATAAATGTGAAAAGAAATATTACAAGAAGGGAGAATTGAAGTCGCACGTTTTGAAAATGCATTCGTAA
- Protein Sequence
- MPDTTLCRVCLADNIKMHEIINTRYQEMFERFTGEMLVPGDGRPETLCYLCHSQVQKCWRFFEMARNSEMNLSKLLIYGVQLTQVSVALIDKVNVHNLSVSTIKKTFDYTFCDDVKEESGSPVKTELADDKTVQLISEIEDLATETFDDHSESDPLEAVKIVNVKVEDESGMLPVTSHTCDICQRLFNTYNGLTRHKSIAHKQKDKNKIKNKCTTCGETFSNPHLLKIHMRFHKKNDVYTESLIVSITTGEKFGCILCKKTFTQKGHLKTHIMAFHTGERPYACELCDKKFVQKSNLGTHMRTNHTKKPFTCSVCDGVCDDENHLKEHMSVHSGVSEEQINSLDNTKPFTCESCGKSFSAKSHLKSHVMAIHTGERPFACGMCDKKYTQKSHLRLHARLSHVIEKPFACDECEMRFDDAESLKKHAKTHAELQVFTCPTCSRVMYSEASYNKHVLSHTEHNDIDEIKVAKVKPFGCVMCNKRFGWKSHLKSHIMAIHTGQRPFACSLCDKTFVQRSNLRLHAKVAHSIVNPLNCSICKRVFRNEENLKKHMSIHSEGAIDYGANQDKSKKFPCSLCNKRFNWKSHLKTHIMALHTDERPFVCGVCHKKFVTKSYLRYHMKYIHPGEKATQQMLNIGRQYTCNVCAIKFTSKINFEKHRTLHTDTPPFLCVKCDKKFNSKTDLNVHNLSLHAEELPFTCDICHSRFEDHAALKTHNTTHIENKLTCDTCGRTFLARSALKRHMVIHSDEKPFSCKVCKKAFKQERVLKSHMQIHTEVKQFGCNICDRRFYQRGNLTSHMRIHSGEKPYVCDRCGNSFNQKSHLRTHVLFIHSTEKPFTCTVCNKKFRLRSCLRNHQMVHTGERPYPCDKCEKKYYKKGELKSHVLKMHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00686869;
- 90% Identity
- iTF_00686869;
- 80% Identity
- iTF_00686869;