Gpyr007597.1
Basic Information
- Insect
- Gandaritis pyraliata
- Gene Symbol
- -
- Assembly
- GCA_947859175.1
- Location
- OX401872.1:7090625-7095043[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.4 1.4e+04 -3.5 0.3 27 48 178 199 176 202 0.79 2 13 0.0073 76 3.7 0.0 21 50 276 305 272 308 0.88 3 13 0.0081 84 3.6 0.0 22 46 306 330 300 334 0.88 4 13 0.0046 47 4.4 0.1 21 50 373 402 369 407 0.90 5 13 0.003 31 5.0 0.0 23 44 432 453 416 458 0.84 6 13 0.006 62 4.0 0.1 23 48 500 525 496 528 0.90 7 13 0.00013 1.3 9.4 0.1 23 46 529 552 524 554 0.90 8 13 0.0072 75 3.8 0.0 21 48 596 623 593 625 0.87 9 13 0.11 1.1e+03 0.0 0.0 21 43 692 714 687 720 0.84 10 13 0.00011 1.1 9.7 0.1 21 46 747 772 739 781 0.88 11 13 0.15 1.6e+03 -0.4 0.0 26 52 780 806 774 808 0.86 12 13 0.028 2.9e+02 1.9 0.1 21 48 803 830 792 832 0.87 13 13 0.0045 47 4.4 0.4 21 44 832 855 829 863 0.88
Sequence Information
- Coding Sequence
- ATGCCTGATTCAACTTTATGCCGTGTGTGTCTCGCCGATAATGTGAAAATGCACGAAATAAACAACACCCGGTATCAGGAGATGTTTGAGAAATTGACTGGAGAGACGCTCATGTCAGGAGATGGTCAACCTGAGACGTTGTGCTTCCTCTGCCGTTCTCAAGTACAGAAGTGCTGGAGGTTCTTTGAGATGGCTCAGAACTCTGAGAAGAATCTATCAAAGTTGCTTGATTATGGAGGACAGCTGACTCGACTATCAGTGGCTCGCATTGATAAAGTAAATGTTCACAACCTGTCTTTCTCCACTATCAAGAAATCCTTTGACTGTACAGTATGTGAGGATGTGAAAGAGGAAACTGGAAGCCCTGTCAAAACGGAGTCAGCTGATGACAAAACAGTACAACTTGTTCATGAAATTGAAGATCTAGCAACGGACACTTATGATGACAATTCAGAGTCGGATCCACTTGAAGCCATTAAAACAGTCAATGTCAAAGTTGAAGATGAAACAGCCGTGCTGCCTTCTCATCCATGTGACATATGTCAAAGACGGTTTAACACTATTAATGGTTTGACCCGGCACAAAAATATAGCTCACAAACAAAAAGATGAAGATAAAACAAAATCTAAGTGCAAAACTTGTAGTGAAACATTTTCAGATCCTCATCTTTTAAAAATACACATGAGATTTCACAAGAAAAATGATGTATACTCGGAAAGTTTAATAGTTTCAATGTCAACGGGAGAAAAGTTTGGCTGCATACTTTGCAAAAAGAGATTCACTCAAAAAGGGCATTTAAAAACTCATATTATGGCTTTTCACACCGGAGAAAGACCATATGCCTGCAGTCTGTGTGATAAGAAGTTTGTTCAAAAAAGTAATCTAGGAACGCATATGAGAACAAATCACGCTTTAAAAAAACCATTTACTTGCACAATGTGCGATGGAGTGTGTACCGATGAGAATCACCTGAAAGAGCATATGAATATTCACTGTGGAGTAAGCGAAGAAGAAATTAATCATTTTGATAATCCAAAGCCGTTTACTTGTGAGAACTGTGGAAAGTCGTTCTCAGCAAAATCACATTTGAAATCTCATATTATGGCGATTCATACAGGAGAACGGCCGTTCGCTTGCGGGATGTGTGATAAAAAATACACTCAGAAAAGCCATTTAAGACTCCACGCGAGACTATCCCACGTTGTCGAAAAACCATTCGCGTGCGACGAATGTGAATTGAGATTTGACGACGCAGAAAGTTTGAGGAAACACGCGAAAAGTCACGTTGATGTACAAGGATTCACATGCCCCACGTGCAGTAAAATTATCTATTCGGAAGCTAATTACAACAAGCACATGCTTAGTCACACTGAACACGGTGATATTGATGAGATAAAAGTCGCGAAAGTGAAGCCTTTTGGTTGTGTGATGTGTAACAAGAGATTTGGATGGAAATCTCATTTGAAAACGCATATAATGGCGATCCACACTGGACAGAGACCTTTTTCCTGTAATTTGTGTGATAAAACATTCGTCCAAAGAAGCAACTTAAGGCTGCACGCAAAAGTAGCACATTCTATCGTTAATCCATTGAATTGTAACATTTGCAAACGTGTGTTCCGGAATGAAGATAATTTAAAAAAGCATATGAGTATTCACAGCGAAGGAACTATAGATTACAGTGTAAACAATCAAGATAAATCAAAAAAGTTCCCCTGCTCGTTGTGTAATAAACAATTCAATTGGAAATCTCATCTTAAAACCCACATAATGGCATTACACACAGATGAAAGACCTTTTACGTGCGGTGTGTGCCATAAAAAGTTCGTCACAAAGAGCTACCTAAGATATCACATGAAGTACATGCATCCAGAAGAAGAAGCCACACAGCAATTGCTTAATATAAGTAGAGAGTTTACCTGCAACGTATGCGCGATCAAATTCACAAGTAAAATAAGCTTTGAGAAGCACCAAAGTCTGCACATAGATACCCCTCCGTTCCTATGTGTTAAATGTGATAAAAAATTCAACTCGAAAACAGATATAGACGCGCATAACTTAAGCTTACACGCTGAAGAACTGCCGTTCATATGCGAGATATGTCACTCTCGGTTCGAAGACAATGCAGCTTTGAAGAAACATAATACATCACACGTAGAGAATGAACTATCCTGTGACACCTGTGGTCGGACGTTTCTCGCACGCAGCGCTCTGAAACGGCACATGGTGACACATAGCGATGAAAAACCGTTTTCCTGTAAAATTTGCAAGAAAGCGTTCAAACAGGAGCGCGTTTTGAAATCGCACATGCAAATACATACAGAGATAAAACAATTTGGCTGCAATATATGTGATAGAAGGTTCTACCAACGGGGAAATTTAACTGGTCATATGAGGATACACTCCGGAGAAAAGCCATATGTGTGCGACCGTTGTGGGAACAGTTTTAATCAAAAAAGTCATCTCCGGACCCACGTTTTGTTCATCCACAGTGCAGAAAAGCCGTTTACTTGCACGGTATGTAACAAAAAGTTTAGGTTGAGGAGTTGTTTGAGGAATCATCAGATGGTGCATACTGGGGAACGGCCGTACCCGTGCGATAAATGTGATAAGAAATACTATAAGAAGGGAAAGTTGAAGTCGCACGTTTTGCAAATGCACTCGTGA
- Protein Sequence
- MPDSTLCRVCLADNVKMHEINNTRYQEMFEKLTGETLMSGDGQPETLCFLCRSQVQKCWRFFEMAQNSEKNLSKLLDYGGQLTRLSVARIDKVNVHNLSFSTIKKSFDCTVCEDVKEETGSPVKTESADDKTVQLVHEIEDLATDTYDDNSESDPLEAIKTVNVKVEDETAVLPSHPCDICQRRFNTINGLTRHKNIAHKQKDEDKTKSKCKTCSETFSDPHLLKIHMRFHKKNDVYSESLIVSMSTGEKFGCILCKKRFTQKGHLKTHIMAFHTGERPYACSLCDKKFVQKSNLGTHMRTNHALKKPFTCTMCDGVCTDENHLKEHMNIHCGVSEEEINHFDNPKPFTCENCGKSFSAKSHLKSHIMAIHTGERPFACGMCDKKYTQKSHLRLHARLSHVVEKPFACDECELRFDDAESLRKHAKSHVDVQGFTCPTCSKIIYSEANYNKHMLSHTEHGDIDEIKVAKVKPFGCVMCNKRFGWKSHLKTHIMAIHTGQRPFSCNLCDKTFVQRSNLRLHAKVAHSIVNPLNCNICKRVFRNEDNLKKHMSIHSEGTIDYSVNNQDKSKKFPCSLCNKQFNWKSHLKTHIMALHTDERPFTCGVCHKKFVTKSYLRYHMKYMHPEEEATQQLLNISREFTCNVCAIKFTSKISFEKHQSLHIDTPPFLCVKCDKKFNSKTDIDAHNLSLHAEELPFICEICHSRFEDNAALKKHNTSHVENELSCDTCGRTFLARSALKRHMVTHSDEKPFSCKICKKAFKQERVLKSHMQIHTEIKQFGCNICDRRFYQRGNLTGHMRIHSGEKPYVCDRCGNSFNQKSHLRTHVLFIHSAEKPFTCTVCNKKFRLRSCLRNHQMVHTGERPYPCDKCDKKYYKKGKLKSHVLQMHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00686869;
- 90% Identity
- iTF_00737667;
- 80% Identity
- iTF_00737667;