Gpyr007597.1
Basic Information
- Insect
- Gandaritis pyraliata
- Gene Symbol
- -
- Assembly
- GCA_947859175.1
- Location
- OX401872.1:7090625-7095043[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00042 0.024 15.3 0.9 1 23 176 199 176 199 0.95 2 23 2.7e-05 0.0016 19.0 2.8 2 23 210 231 209 231 0.97 3 23 0.0019 0.11 13.2 2.8 5 23 255 274 253 274 0.92 4 23 3.2e-07 1.9e-05 25.1 1.0 1 23 280 303 280 303 0.97 5 23 0.00038 0.022 15.4 2.4 1 23 309 331 309 331 0.98 6 23 6.6e-07 3.8e-05 24.1 1.2 1 23 348 371 348 371 0.95 7 23 2.4e-05 0.0014 19.1 2.1 1 23 377 400 377 400 0.95 8 23 0.00017 0.0099 16.5 0.1 1 23 406 428 406 428 0.97 9 23 0.00059 0.034 14.8 0.5 1 23 434 456 434 456 0.98 10 23 0.011 0.66 10.7 1.0 3 23 475 496 473 496 0.94 11 23 9.9e-07 5.7e-05 23.5 0.5 1 23 502 525 502 525 0.96 12 23 6.2e-07 3.6e-05 24.2 0.9 2 23 532 553 531 553 0.96 13 23 0.00058 0.034 14.8 1.6 1 23 571 594 571 594 0.95 14 23 1.8e-05 0.001 19.6 4.8 1 23 600 623 600 623 0.97 15 23 0.00093 0.054 14.2 1.1 1 23 639 661 639 661 0.97 16 23 0.039 2.2 9.1 0.6 1 23 667 690 667 690 0.87 17 23 0.0025 0.15 12.8 1.2 1 23 696 718 696 718 0.95 18 23 0.00049 0.028 15.1 0.4 2 23 724 745 723 745 0.96 19 23 1.3e-05 0.00075 20.0 1.4 1 23 751 773 751 773 0.98 20 23 3.6e-06 0.00021 21.8 0.5 3 23 781 801 779 801 0.98 21 23 4.5e-05 0.0026 18.3 1.9 1 23 807 830 807 830 0.93 22 23 7.1e-05 0.0041 17.7 5.0 1 23 836 858 836 858 0.98 23 23 0.00044 0.026 15.2 1.6 1 23 864 887 864 887 0.94
Sequence Information
- Coding Sequence
- ATGCCTGATTCAACTTTATGCCGTGTGTGTCTCGCCGATAATGTGAAAATGCACGAAATAAACAACACCCGGTATCAGGAGATGTTTGAGAAATTGACTGGAGAGACGCTCATGTCAGGAGATGGTCAACCTGAGACGTTGTGCTTCCTCTGCCGTTCTCAAGTACAGAAGTGCTGGAGGTTCTTTGAGATGGCTCAGAACTCTGAGAAGAATCTATCAAAGTTGCTTGATTATGGAGGACAGCTGACTCGACTATCAGTGGCTCGCATTGATAAAGTAAATGTTCACAACCTGTCTTTCTCCACTATCAAGAAATCCTTTGACTGTACAGTATGTGAGGATGTGAAAGAGGAAACTGGAAGCCCTGTCAAAACGGAGTCAGCTGATGACAAAACAGTACAACTTGTTCATGAAATTGAAGATCTAGCAACGGACACTTATGATGACAATTCAGAGTCGGATCCACTTGAAGCCATTAAAACAGTCAATGTCAAAGTTGAAGATGAAACAGCCGTGCTGCCTTCTCATCCATGTGACATATGTCAAAGACGGTTTAACACTATTAATGGTTTGACCCGGCACAAAAATATAGCTCACAAACAAAAAGATGAAGATAAAACAAAATCTAAGTGCAAAACTTGTAGTGAAACATTTTCAGATCCTCATCTTTTAAAAATACACATGAGATTTCACAAGAAAAATGATGTATACTCGGAAAGTTTAATAGTTTCAATGTCAACGGGAGAAAAGTTTGGCTGCATACTTTGCAAAAAGAGATTCACTCAAAAAGGGCATTTAAAAACTCATATTATGGCTTTTCACACCGGAGAAAGACCATATGCCTGCAGTCTGTGTGATAAGAAGTTTGTTCAAAAAAGTAATCTAGGAACGCATATGAGAACAAATCACGCTTTAAAAAAACCATTTACTTGCACAATGTGCGATGGAGTGTGTACCGATGAGAATCACCTGAAAGAGCATATGAATATTCACTGTGGAGTAAGCGAAGAAGAAATTAATCATTTTGATAATCCAAAGCCGTTTACTTGTGAGAACTGTGGAAAGTCGTTCTCAGCAAAATCACATTTGAAATCTCATATTATGGCGATTCATACAGGAGAACGGCCGTTCGCTTGCGGGATGTGTGATAAAAAATACACTCAGAAAAGCCATTTAAGACTCCACGCGAGACTATCCCACGTTGTCGAAAAACCATTCGCGTGCGACGAATGTGAATTGAGATTTGACGACGCAGAAAGTTTGAGGAAACACGCGAAAAGTCACGTTGATGTACAAGGATTCACATGCCCCACGTGCAGTAAAATTATCTATTCGGAAGCTAATTACAACAAGCACATGCTTAGTCACACTGAACACGGTGATATTGATGAGATAAAAGTCGCGAAAGTGAAGCCTTTTGGTTGTGTGATGTGTAACAAGAGATTTGGATGGAAATCTCATTTGAAAACGCATATAATGGCGATCCACACTGGACAGAGACCTTTTTCCTGTAATTTGTGTGATAAAACATTCGTCCAAAGAAGCAACTTAAGGCTGCACGCAAAAGTAGCACATTCTATCGTTAATCCATTGAATTGTAACATTTGCAAACGTGTGTTCCGGAATGAAGATAATTTAAAAAAGCATATGAGTATTCACAGCGAAGGAACTATAGATTACAGTGTAAACAATCAAGATAAATCAAAAAAGTTCCCCTGCTCGTTGTGTAATAAACAATTCAATTGGAAATCTCATCTTAAAACCCACATAATGGCATTACACACAGATGAAAGACCTTTTACGTGCGGTGTGTGCCATAAAAAGTTCGTCACAAAGAGCTACCTAAGATATCACATGAAGTACATGCATCCAGAAGAAGAAGCCACACAGCAATTGCTTAATATAAGTAGAGAGTTTACCTGCAACGTATGCGCGATCAAATTCACAAGTAAAATAAGCTTTGAGAAGCACCAAAGTCTGCACATAGATACCCCTCCGTTCCTATGTGTTAAATGTGATAAAAAATTCAACTCGAAAACAGATATAGACGCGCATAACTTAAGCTTACACGCTGAAGAACTGCCGTTCATATGCGAGATATGTCACTCTCGGTTCGAAGACAATGCAGCTTTGAAGAAACATAATACATCACACGTAGAGAATGAACTATCCTGTGACACCTGTGGTCGGACGTTTCTCGCACGCAGCGCTCTGAAACGGCACATGGTGACACATAGCGATGAAAAACCGTTTTCCTGTAAAATTTGCAAGAAAGCGTTCAAACAGGAGCGCGTTTTGAAATCGCACATGCAAATACATACAGAGATAAAACAATTTGGCTGCAATATATGTGATAGAAGGTTCTACCAACGGGGAAATTTAACTGGTCATATGAGGATACACTCCGGAGAAAAGCCATATGTGTGCGACCGTTGTGGGAACAGTTTTAATCAAAAAAGTCATCTCCGGACCCACGTTTTGTTCATCCACAGTGCAGAAAAGCCGTTTACTTGCACGGTATGTAACAAAAAGTTTAGGTTGAGGAGTTGTTTGAGGAATCATCAGATGGTGCATACTGGGGAACGGCCGTACCCGTGCGATAAATGTGATAAGAAATACTATAAGAAGGGAAAGTTGAAGTCGCACGTTTTGCAAATGCACTCGTGA
- Protein Sequence
- MPDSTLCRVCLADNVKMHEINNTRYQEMFEKLTGETLMSGDGQPETLCFLCRSQVQKCWRFFEMAQNSEKNLSKLLDYGGQLTRLSVARIDKVNVHNLSFSTIKKSFDCTVCEDVKEETGSPVKTESADDKTVQLVHEIEDLATDTYDDNSESDPLEAIKTVNVKVEDETAVLPSHPCDICQRRFNTINGLTRHKNIAHKQKDEDKTKSKCKTCSETFSDPHLLKIHMRFHKKNDVYSESLIVSMSTGEKFGCILCKKRFTQKGHLKTHIMAFHTGERPYACSLCDKKFVQKSNLGTHMRTNHALKKPFTCTMCDGVCTDENHLKEHMNIHCGVSEEEINHFDNPKPFTCENCGKSFSAKSHLKSHIMAIHTGERPFACGMCDKKYTQKSHLRLHARLSHVVEKPFACDECELRFDDAESLRKHAKSHVDVQGFTCPTCSKIIYSEANYNKHMLSHTEHGDIDEIKVAKVKPFGCVMCNKRFGWKSHLKTHIMAIHTGQRPFSCNLCDKTFVQRSNLRLHAKVAHSIVNPLNCNICKRVFRNEDNLKKHMSIHSEGTIDYSVNNQDKSKKFPCSLCNKQFNWKSHLKTHIMALHTDERPFTCGVCHKKFVTKSYLRYHMKYMHPEEEATQQLLNISREFTCNVCAIKFTSKISFEKHQSLHIDTPPFLCVKCDKKFNSKTDIDAHNLSLHAEELPFICEICHSRFEDNAALKKHNTSHVENELSCDTCGRTFLARSALKRHMVTHSDEKPFSCKICKKAFKQERVLKSHMQIHTEIKQFGCNICDRRFYQRGNLTGHMRIHSGEKPYVCDRCGNSFNQKSHLRTHVLFIHSAEKPFTCTVCNKKFRLRSCLRNHQMVHTGERPYPCDKCDKKYYKKGKLKSHVLQMHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00686869;
- 90% Identity
- iTF_00738005;
- 80% Identity
- iTF_00738005;