Emer022816.1
Basic Information
- Insect
- Eudonia mercurella
- Gene Symbol
- -
- Assembly
- GCA_963082485.1
- Location
- OY720035.1:17393186-17398103[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-10 8.9e-08 32.9 0.0 4 39 122 158 120 162 0.90 2 4 9.5e-11 5e-08 33.7 0.3 2 39 174 211 173 214 0.92 3 4 8.3e-15 4.3e-12 46.7 0.0 2 45 229 273 228 273 0.96 4 4 4.3e-17 2.2e-14 54.1 0.0 1 43 280 323 280 324 0.96
Sequence Information
- Coding Sequence
- ATGATGTTTTCGCCGCAGTCAGGGTTGGAGGAGCTAgcgccgcccgcgccggcgGGCCCCGCCGCCACGCCGGTATGCGTGAAGCAAGAGCCGGCGGAGGCGCCGCCCGCCGTCATGCTCGAGAATCTGCAGCCCGCGCCGCCCAGCAACGCCACGTGCTCGACATTGCTAGACCGACATCTCGCAATGCTCAGCTCCACCGAAGTGCCTGACTCATCGGACTTTACGCCACTAATGGCTGTAAAGGACGAGCCGTTATCTGAAGGGGAACAACTACAGTTCAGTGGCGAGGACACGAACGACTCGTGCAGCCAATCGGAGCCCGGCCAAACGCGCAGCAGCCCCAAGAGCTGGAACCAGCGCGATATGGACAACGCGTTGGAGGCCTTGAGGAAGCACAACATGAGCCTTACTAAGGCGTCGGCGACGTACGGCATCCCGTCAACGACGCTGTGGCAGCGCGCGCACCGGCTGGGCATCGACACGCCCAAGAAGGAGGGCGCCGCCAAGTCCTGGAGTGAGGCCGACCTGCGCGGCGCGCTGCACGCGCTGCGGGCCGGCGCCATCTCCGCCAACAAGGCTAGCAAGGCGTATGGCATCCCGAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCCCCGACGGCGTGGCGCCGCGCAGACCTGGAGCGCGCGCTCGCCTCCATCCGCTGCGGCGCCTGCAGCGTGCAGCGCGCCGCCTCGCAGTACGGCATCCCCACCGGCACATTGTACGGGCGATGTAAACGGGAGGGCATTGAACTGTCCCGGTCCAACCCTACGCCATGGTCGGAAGACGCGATGGGAGAGGCACTAGAAGCCGTCAGGATTGGCCAGATGTCCATAAACCAGGCCGCCATCCACTTCAACCTGCCGTACTCGTCGCTCTACGGCCGGTTCAAGAGGTGCAAATACCAGGTGCAGGGTATCCCACCTATACAGCCGGACATGCAGAAGGGCATGGAAATAGAGAACAGCCAGAGTGTACCCCCTGAGGGGCAGTACTACCCGCAGCAGTTGGCCGGCCAGCCGCACGAGCACGAGCACGAGCTCAGCCTGCACGGCCAGTACCTGAGCCCTAGCTTCGCGGAGTACGCGGGCGGCGGGGCGGAGCTGGGGGGAGCGGGCGCGGAGCCCTACGCCGCGCTGTACTACGGCTGCGGCGCCGGCGTGGCGGGCAGCTGA
- Protein Sequence
- MMFSPQSGLEELAPPAPAGPAATPVCVKQEPAEAPPAVMLENLQPAPPSNATCSTLLDRHLAMLSSTEVPDSSDFTPLMAVKDEPLSEGEQLQFSGEDTNDSCSQSEPGQTRSSPKSWNQRDMDNALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRCGACSVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHFNLPYSSLYGRFKRCKYQVQGIPPIQPDMQKGMEIENSQSVPPEGQYYPQQLAGQPHEHEHELSLHGQYLSPSFAEYAGGGAELGGAGAEPYAALYYGCGAGVAGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00284452; iTF_00035567; iTF_00034612; iTF_00318797; iTF_00681581;
- 90% Identity
- iTF_00681581;
- 80% Identity
- -