Csup001751.1
Basic Information
- Insect
- Chilo suppressalis
- Gene Symbol
- -
- Assembly
- None
- Location
- chr12:2556541-2578703[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.9e-11 2.9e-08 33.0 0.0 4 39 175 211 172 215 0.90 2 4 2.7e-11 2e-08 33.5 0.3 2 39 227 264 226 267 0.92 3 4 6.1e-15 4.5e-12 45.2 0.1 2 45 282 326 281 326 0.96 4 4 1.9e-18 1.4e-15 56.4 0.0 1 42 333 375 333 377 0.95
Sequence Information
- Coding Sequence
- ATGCCGGGGCCGCAGCTCGACGCCACGAGCGTCAAGTGTGAGCCGCCGTCGGATGCGGAGGACAGCAACTCCCAGTATTCGCACGTGTACTTCAGCCATCAGCTTCCGTCTTTGGGCCAGTGTCCAATCAAAGTGGAAAATGAGAGTGGTCAAGAAGAGGGCGTACCGACCGATCTTTTGCAGCATTTACAGACAGGGCTGGAGGAGCTGGCGCCCGCGGGGCCCGCCGCCACGCCGGTGTGCGTCAAGCAGGAGCCGGCGGAGGCGCCAGCCCTCACGCTAGAGAATCTGGAACCCGCGCTCTCTACTAACTGCACGGGTTCTACATTGCTGGACCGACATCTTGCAATGCTTAACTCCACCGAAGTGCCTGACTCATCAGACTTTATGCCTCTAATGGCAAAAGATGAACCACTATCTGAAGGAGAACAACAACAGTTCAGCGGTGACGACACAAGCGACTCATGCAGTCAAACGGAGCCGTTGCATACGAGAAGCAGCCCGAAGAGTTGGACACAGCGTGACATGGATAATGCATTGGAGGCTTTAAGAAAACACAATATGAGCCTTACTAAGGCTTCCGCGACTTACGGTATTCCGTCCACTACGTTATGGCAGCGAGCACATAGGCTTGGTATTGACACGCCGAAGAAGGAAGGTGCTTCTAAGTCCTGGAGCGAAGCGGATCTACGAGGGGCACTGCACGCACTCAGAGCCGGCGCTATATCCGCGAATAAAGCTAGTAAAGCATACGGTATTCCAAGCAGCACGCTGTATAAGATAGCCCGGCGCGAGGGTATCCGGCTGGCGGCGCCGTTCAACGCCGCGCCCACCGCCTGGCGCCGCGCCGACCTCGAGCGCGCGCTCGCCTCCATCCGCTGCGGCGCCAGCAGCGTGCAGCGCGCCGCCTCGCAGTACGGCATCCCCACCGGTACCCTATATGGAAGATGTAAGCGAGAAGGCATCGAGCTGTCGCGGTCTAATCCCACGCCGTGGTCTGAAGACGCCATGGGTGAAGCATTGGAAGCGGTCAGGGTAGGTCAGATGTCCATAAACCAAGCGGCCATCCATTACAACCTCCCATATTCCTCACTGTACGGCCGCTTTAAGAGATGCAAGTACCAAATTCAGGGTCACTCAATGCATCTAGATATGCAGAAGTCAATGGAAGTAGACCCACAGACGCAACAGCAGGATATACAATATTATCAGCAACCAATGCCAGTTCAGGCTTCTCATCCGAATGAACAAGAACATAATATACAAAATCCCTACTTGCACCACAGCGTCCATATGAGTGAGCAAGACAGCATGATACAAGAACATTACGGGCAAGCGATTTATTACGGCTGCAACAGCATCATGACCAGTTGA
- Protein Sequence
- MPGPQLDATSVKCEPPSDAEDSNSQYSHVYFSHQLPSLGQCPIKVENESGQEEGVPTDLLQHLQTGLEELAPAGPAATPVCVKQEPAEAPALTLENLEPALSTNCTGSTLLDRHLAMLNSTEVPDSSDFMPLMAKDEPLSEGEQQQFSGDDTSDSCSQTEPLHTRSSPKSWTQRDMDNALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRCGASSVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQIQGHSMHLDMQKSMEVDPQTQQQDIQYYQQPMPVQASHPNEQEHNIQNPYLHHSVHMSEQDSMIQEHYGQAIYYGCNSIMTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00682280;
- 90% Identity
- -
- 80% Identity
- -