Agen028025.1
Basic Information
- Insect
- Agriphila geniculea
- Gene Symbol
- -
- Assembly
- GCA_943789515.1
- Location
- CALSUL010000346.1:993033-1000555[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-10 1.3e-07 33.0 0.0 4 39 175 211 172 215 0.90 2 4 9.6e-11 8.6e-08 33.6 0.3 2 39 227 264 226 267 0.92 3 4 2.2e-14 2e-11 45.2 0.1 2 45 282 326 281 326 0.96 4 4 3.1e-18 2.8e-15 57.5 0.0 1 43 333 376 333 377 0.96
Sequence Information
- Coding Sequence
- ATGCCGGGGCACGGGGCGCGCGTCAAGTGCGAGCCGCCGTCCGACGGGGAGGACAGTAACTCTCAGTACTCGCACGGATTCTTTACCAATCAGCTGCCGTCCTTAGGTCATTGTCCAGTGAAGCTGGAAAATGACGGCCCACAATCGGAGGGTGACCCCACGGACCTACTGCATCATCTACAGACAGGGCTGGAGGAGTTGGCTCCCCCTGCGCCCGCGGGGCCCGCAGCCACACCCGTGTGCGTAAAGCAGGAGCCGGCGGACGCGCCGACACTTATGCTCGAGAACCTCGAGCCCGCACAGACCACTAACTGTACGGGCTCAACATTGCTGGATAGACATTTGGCAATGCTCAATTCAACCGAAGTGCCTGACTCATCAGAATTTATGCCGTTAATGACTAAGGACGAACCGTTGTCTGAAGGAGAACAGCAACAGTTAAGCGGTGATGACACGAGCGACTCGTGCAGCCTGCCGGAGCCATCATACACGAGGAGCAGCCCAAAAAGCTGGACCCAGCGGGACATGGACAACGCCTTGGAGGCCTTGAGGAAACACAATATGAGCCTTACTAAGGCATCAGCAACATACGGTATTCCGTCCACAACACTATGGCAGCGAGCGCACAGGCTTGGCATCGATACGCCTAAGAAGGAAGGCGCTTCCAAGTCCTGGAGTGAAGCGGACCTGAGAGGAGCCTTGCATGCGCTAAGAGCTGGTGCTATATCCGCTAACAAAGCTAGCAAGGCTTATGGCATACCGAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGTCTAGCGGCGCCGTTCAACGCGGCGCCCACGGCGTGGCGGCGCGCTGACCTCGAGCGCGCGCTCGCCTCCATCCGCTGCGGCGCCAGCAGCGTGCAGCGCGCCGCCTCGCAGTACGGGATACCCACCGGGACACTTTATGGAAGATGTAAACGGGAAGGCATTGAGCTGTCTCGGTCTAACCCCACACCTTGGTCTGAAGATGCGATGGGTGAAGCACTAGAAGCGGTTAGAGTAGGTCAGATGTCTATTAACCAGGCTGCCATCCATTACAACCTGCCGTACTCCTCTCTCTACGGCCGGTTTAAGAGATGCAAATACCAAACTcagGGTCCATCATTACTTTCCGACGTACAAAAAGCAATGGACGTGGATCAGACTCAGAATCAGGAGATGCAGTACTACCAACAATCTTTACCCATGGAGTCTACGCACCAAACGGAACACCACCACAACTTACAGAACCCCTACTTACACCATAATGTGCATTTGAGTGAGCAGGACGGCATGATACACGACCACTATGCGCAGGCGTACTACGGCTGCAGCAGAATCGTGACCAGTTGA
- Protein Sequence
- MPGHGARVKCEPPSDGEDSNSQYSHGFFTNQLPSLGHCPVKLENDGPQSEGDPTDLLHHLQTGLEELAPPAPAGPAATPVCVKQEPADAPTLMLENLEPAQTTNCTGSTLLDRHLAMLNSTEVPDSSEFMPLMTKDEPLSEGEQQQLSGDDTSDSCSLPEPSYTRSSPKSWTQRDMDNALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRCGASSVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQTQGPSLLSDVQKAMDVDQTQNQEMQYYQQSLPMESTHQTEHHHNLQNPYLHHNVHLSEQDGMIHDHYAQAYYGCSRIVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00682280;
- 90% Identity
- iTF_00035567; iTF_00284452;
- 80% Identity
- -