Cpin011949.1
Basic Information
- Insect
- Catoptria pinella
- Gene Symbol
- -
- Assembly
- GCA_963556745.1
- Location
- OY750771.1:12741650-12747069[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.7e-11 5e-08 33.0 0.0 4 39 175 211 172 215 0.90 2 4 4.5e-11 3.4e-08 33.5 0.3 2 39 227 264 226 267 0.92 3 4 1e-14 7.8e-12 45.2 0.1 2 45 282 326 281 326 0.96 4 4 1.5e-18 1.1e-15 57.5 0.0 1 43 333 376 333 377 0.96
Sequence Information
- Coding Sequence
- ATGCCGGGGCACGGGGCGCGCGTCAAGTGCGAACCGCCGTCCGACGAGGAGGACAGTAACTCTCAGTACTCGCACGGATTCTTTACCAATCAGCTGCCATCCTTAGGTCATTGTCCAGTGAAACTGGAAAATGACGGTCAACAATCGGAGGGCGACGCCACGGACCTCCTGCAACATCTACAGACAGGGCTGGAGGAGTTGGCACCACCCGCGCCGGCGGGGCCCGCCGCCACGCCGGTGTGCGTGAAGCAGGAGCCGGCGGAAGCGCCGGCACTCATGCTCGAGAACCTCGAGCCCGCGCAGACGAGTAACTGTACGGGCTCAACATTGCTGGATAGACATCTGGCCATGCTCAATTCTACCGAAGTGCCTGACTCATCAGAATTTATGCCTCTAATGGCTAAGGACGAACCGTTGTCTGAAGGAGAACAGCAACAGTTAAGCGGTGATGACACGAGCGACTCGTGCAGCCAGCCGGAGCCGTCATACACGAGGAGCAGCCCCAAAAGCTGGACCCAGCGAGACATGGACAACGCCTTGGAGGCCTTGAGAAAACACAATATGAGCCTTACTAAGGCATCAGCAACATACGGTATTCCGTCCACAACACTATGGCAGCGAGCGCACAGGCTTGGCATCGATACGCCTAAGAAGGAAGGCGCTTCCAAGTCCTGGAGTGAAGCGGACCTTAGAGGAGCCTTGCATGCGCTCAGAGCTGGTGCTATATCTGCTAACAAAGCTAGCAAGGCCTATGGCATCCCGAGCAGCACGTTGTACAAGATCGCGCGGCGCGAGGGCATCCGTCTAGCGGCGCCGTTCAATGCGGCGCCCACAGCGTGGCGGCGCGCCGACCTCGAGCGCGCGCTCGCCTCCATCCGCTGTGGCGCCAGCAGCGTGCAGCGCGCCGCATCGCAGTACGGGATACCCACCGGAACACTTTATGGAAGATGTAAACGGGAAGGCATTGAGCTGTCTCGGTCTAATCCCACACCGTGGTCTGAAGATGCGATGGGTGAAGCACTAGAAGCGGTTAGaGTAGGTCAGATGTCTATTAACCAGGCTGCCATCCATTACAACCTGCCGTATTCCTCTCTGTACGGTCGGTTTAAGAGATGCAAATACCAAACTCAGGGTCCATCATTACATCCCGACGTACAAAAAGCAATGGATGTGGATCCTCAGTCTCAGCATCAGGAAATGCAGTACTACCAACAATCTTTACCCATGGAGTCTATGCATCAAACGGAACACCACCACAACTTACAAAACCCCTACTTACACCATAATGTACATTTGAGTGAGCAGGACGGCATGATACAAGACCACTACGCGCAGGCGTACTACGGCTGCAGCAGCATCATGACCAGTTGA
- Protein Sequence
- MPGHGARVKCEPPSDEEDSNSQYSHGFFTNQLPSLGHCPVKLENDGQQSEGDATDLLQHLQTGLEELAPPAPAGPAATPVCVKQEPAEAPALMLENLEPAQTSNCTGSTLLDRHLAMLNSTEVPDSSEFMPLMAKDEPLSEGEQQQLSGDDTSDSCSQPEPSYTRSSPKSWTQRDMDNALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRCGASSVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQTQGPSLHPDVQKAMDVDPQSQHQEMQYYQQSLPMESMHQTEHHHNLQNPYLHHNVHLSEQDGMIQDHYAQAYYGCSSIMTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00682280;
- 90% Identity
- iTF_00034612;
- 80% Identity
- -