Basic Information

Insect: Epinotia ramella
Gene Symbol: mbr-1
Assembly: GCA_947578815.1
Location: OX388221.1:4451503-4492460[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 9.9e-15 9.1e-12 45.4 0.0 1 39 148 187 148 193 0.92

2 2 1.5e-18 1.4e-15 57.6 0.0 1 43 352 395 352 397 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	9.9e-15	9.1e-12	45.4	0.0	1	39	148	187	148	193	0.92
2	2	1.5e-18	1.4e-15	57.6	0.0	1	43	352	395	352	397	0.95

Sequence Information

Coding Sequence: ATGTCCTTCCTATTGAGTCCTGCCTCAGAGTCGGACAGTAGCTCTGTCTCCGGTGCGAAGAGTCCAGCCGCAGCACCCCCGCAGCTGCTGCAGCACCTACTGCAGATGCAGCTACAGGCGCAGAGTCCGCAGGCCATTGCGCAGCTGCAGCAGATGATCGCGACGCTGGCGGCGCTGGGCACGGGGCTGGTCCCACCAGCACTGTCGCAGGCGTGGCTGATGCAGCGGCTTACCCATCGGATGCCCGACAGGCTTCAAGACGTGGAGAAGGCATCAGCGCCAAGCGCCTCCCCGACCTCAGCGGAGCAGCCTCTAGACCTCAGCGCCAAGTCTACATCCAGCACGAGTGGAACTCCTCCGCCGGACGCGAAGGATAACGCCAGATTGAAACGCGCGATAATCGAAGGCGCGGCTGGCAACAGCAGCGCGCGGCGGACTTACACCGAGGACGAGCTCCAGTCAGCCCTCCGAGACATCCAGTCCGGCCGCCTAGGCACGCGCCGAGCCGCCGTCGTTTACGGCATACCCCGCTCCACCCTCCGCAACAAAGTCAACAAGTTCGGCCTCGCGGCAGAACCGGCTGACTCCGATCCTGACTCCGACCCCGAGCGACCAGACTCGCCGCCCTCCGTCATCCTTAAAATACCAACATTCCCGCCCCCGGATGACAAGAGCCCGTCCCCAGCGACTGCCGCTCCGGTCGCTCCCGTAACCCCAATCTTACCTCCTCAACCACCGCTCAACACGCCATCTCCGCTTCTACTCCCCGCATCAGTCTTCGCTGACCCGCCATCGTCCCAACATCTCTTCACGTCGCTGAGCGACGTCATAGCCAAAAGCATAAGTCAGAAATTCCAGCAGCCACTGGAACGGCCGCACCAGGACCTCTCCTTCATGCGCCATCAGGACAGACACGTGTCCGTCATTAAAACTCCACCGGATAACGCTAGAAATTTCTCAATTCCGAGCAACTCACGAGCGCCTACGAACAACAACGGACAACCCGCTACCGGCAAGGGGACTAGACCTAAGAGAGGGAAATACAGAAATTACGATAGGGACAGTCTCGTCGAAGCAGTTAAAGCGGTTCAGAGAGGAGAGATGTCGGTCCATCGCGCCGGTTCGTACTACGGCGTCCCGCATTCGACGCTCGAGTATAAAGTAAAAGAGCGGCATCTGATGAGGCCGCGCAAACGCGAGCCGAAGCCTCCTCAGGACGTGAAGCCGCAGCCGCCAAAGCCGCCGCCCCCGAAGCCGATGAGCAAGCCGTTCACCAACGGCCTCAACGGGCCCGAGGCGCCCGGCTACCCGCCGAGCTACTTCTGGCCGGGCGCCGGGTTCCCCGCCCCGCCCGCGCCGGACCTGTACGCCTCGCACATGATGCGCCGGCTGCGGGAGGAGGCGCCGCCGCCGGCCAACGGCTCCTTCCTCGAGGGCATCATCAGGTCAAGCCTGGAGCGGCCGGGCGCGGCGCTGCTGCAGCGGCTGACGGGGGAGCCGCGGCCGCCGGCGCCGGGCGCGGACGCGAGCCTGCTGCGGAGGCTGGCGGGTGGTGGCGGGGACGAGGATGGGCCGCCGGCGAGGCGCGCGCGGGTGGACTCGTCGGACCGGCAGCTGGCGGCCGAGATGCGCGAGGCGGTGCAGCGGCTGCGCGCGGACAAGCTGCGGCCGCGCAACGGCACGCCCACGCCACCCGCGTGCGGCGCGCCGTCCCCGCCGCCGCCCGCCGCGCCGCCCGACCGCGCCTAG
Protein Sequence: MSFLLSPASESDSSSVSGAKSPAAAPPQLLQHLLQMQLQAQSPQAIAQLQQMIATLAALGTGLVPPALSQAWLMQRLTHRMPDRLQDVEKASAPSASPTSAEQPLDLSAKSTSSTSGTPPPDAKDNARLKRAIIEGAAGNSSARRTYTEDELQSALRDIQSGRLGTRRAAVVYGIPRSTLRNKVNKFGLAAEPADSDPDSDPERPDSPPSVILKIPTFPPPDDKSPSPATAAPVAPVTPILPPQPPLNTPSPLLLPASVFADPPSSQHLFTSLSDVIAKSISQKFQQPLERPHQDLSFMRHQDRHVSVIKTPPDNARNFSIPSNSRAPTNNNGQPATGKGTRPKRGKYRNYDRDSLVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKPPQDVKPQPPKPPPPKPMSKPFTNGLNGPEAPGYPPSYFWPGAGFPAPPAPDLYASHMMRRLREEAPPPANGSFLEGIIRSSLERPGAALLQRLTGEPRPPAPGADASLLRRLAGGGGDEDGPPARRARVDSSDRQLAAEMREAVQRLRADKLRPRNGTPTPPACGAPSPPPPAAPPDRA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01072366;
90% Identity: iTF_01133643; iTF_00871219; iTF_01072366; iTF_00772799; iTF_00148407; iTF_00149300; iTF_00680443; iTF_00410208; iTF_00411347; iTF_00412442;
80% Identity: -